Analysis of interatomic Contacts of Structural Units in PDB entry:
2QJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QJV entry

There are 18 chains in PDB entry 2QJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 35
A
 ALA 37VAL 61
A
 ALA 63ALA 94
A
 VAL 96GLY 131
A
 GLY 133HIS 170
A
 HIS 172VAL 221
A
 VAL 223PRO 224
A
 GLY 226ARG 249
A
 TRP 251SER 264
B
 ALA 2LEU 35
B
 ALA 37VAL 61
B
 ALA 63ALA 94
B
 VAL 96GLY 131
B
 GLY 133HIS 170
B
 HIS 172VAL 221
B
 VAL 223PRO 224
B
 GLY 226ARG 249
B
 TRP 251SER 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2QJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 24Right-handed alpha
Helix 2
2
A
76 80Right-handed 310
Helix 3
3
A
121 125Right-handed 310
Helix 4
4
A
132 136Right-handed 310
Helix 5
5
A
257 264Right-handed 310
Helix 6
6
B
19 24Right-handed alpha
Helix 7
7
B
76 80Right-handed 310
Helix 8
8
B
121 125Right-handed 310
Helix 9
9
B
132 136Right-handed 310
Helix 10
10
B
257 263Right-handed 310
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There are 11 sheets in PDB entry 2QJV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
220 223anti-parallel
Strand 3
A
184 192anti-parallel
Strand 4
A
237 245anti-parallel
Strand 5
A
153 159anti-parallel
Strand 6
A
137 143anti-parallel
Strand 7
A
126 130anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 18first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
102 110anti-parallel
Strand 4
A
48 56anti-parallel
Strand 5
A
85 88anti-parallel
Strand 6
A
118 120anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
94 98anti-parallel
Strand 3
A
59 63anti-parallel
Strand 4
A
66 71anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
230 232anti-parallel
Strand 3
A
197 203anti-parallel
Strand 4
A
210 216anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
254 255anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
180 182anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
220 223anti-parallel
Strand 3
B
184 192anti-parallel
Strand 4
B
237 245anti-parallel
Strand 5
B
153 159anti-parallel
Strand 6
B
137 143anti-parallel
Strand 7
B
126 130anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 18first strand
Strand 2
B
29 35anti-parallel
Strand 3
B
102 110anti-parallel
Strand 4
B
48 56anti-parallel
Strand 5
B
84 88anti-parallel
Strand 6
B
118 120anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
94 98anti-parallel
Strand 3
B
59 63anti-parallel
Strand 4
B
66 71anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
230 232anti-parallel
Strand 3
B
197 203anti-parallel
Strand 4
B
210 216anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
254 255anti-parallel
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