Analysis of interatomic Contacts of Structural Units in PDB entry:
2QJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QJW entry

There are 4 chains in PDB entry 2QJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 175
B
 GLY 0LEU 175
C
 ARG 3LEU 175
D
 MSE 1LEU 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2QJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 31Right-handed alpha
Helix 2
2
A
40 45Right-handed alpha
Helix 3
3
A
46 50Right-handed 310
Helix 4
4
A
54 71Right-handed alpha
Helix 5
5
A
81 92Right-handed alpha
Helix 6
6
A
133 145Right-handed alpha
Helix 7
7
A
160 174Right-handed alpha
Helix 8
8
B
18 32Right-handed alpha
Helix 9
9
B
40 45Right-handed alpha
Helix 10
10
B
46 50Right-handed 310
Helix 11
11
B
54 70Right-handed alpha
Helix 12
12
B
71 73Right-handed 310
Helix 13
13
B
81 92Right-handed alpha
Helix 14
14
B
133 144Right-handed alpha
Helix 15
15
B
160 174Right-handed alpha
Helix 16
16
C
18 31Right-handed alpha
Helix 17
17
C
40 45Right-handed alpha
Helix 18
18
C
46 50Right-handed 310
Helix 19
19
C
54 71Right-handed alpha
Helix 20
20
C
81 91Right-handed alpha
Helix 21
21
C
133 144Right-handed alpha
Helix 22
22
C
160 174Right-handed alpha
Helix 23
23
D
18 32Right-handed alpha
Helix 24
24
D
40 45Right-handed alpha
Helix 25
25
D
46 50Right-handed 310
Helix 26
26
D
54 70Right-handed alpha
Helix 27
27
D
81 92Right-handed alpha
Helix 28
28
D
133 144Right-handed alpha
Helix 29
29
D
160 175Right-handed alpha
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There are 2 sheets in PDB entry 2QJW. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
5 9parallel
Strand 3
A
75 80parallel
Strand 4
A
98 102parallel
Strand 5
A
121 126parallel
Strand 6
A
147 151parallel
Strand 7
B
147 151anti-parallel
Strand 8
B
121 126parallel
Strand 9
B
96 102parallel
Strand 10
B
75 80parallel
Strand 11
B
5 9parallel
Strand 12
B
34 36parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 36first strand
Strand 2
C
5 9parallel
Strand 3
C
75 80parallel
Strand 4
C
98 102parallel
Strand 5
C
121 126parallel
Strand 6
C
147 151parallel
Strand 7
D
147 151anti-parallel
Strand 8
D
121 126parallel
Strand 9
D
98 102parallel
Strand 10
D
76 80parallel
Strand 11
D
5 9parallel
Strand 12
D
34 36parallel
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