Analysis of interatomic Contacts of Structural Units in PDB entry:
2QKI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2QKI entry

There are 8 chains in PDB entry 2QKI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	PRO 643
B	GLU 731	ILE 914
C	THR 1335	PRO 1640
D	SER 1	PRO 643
E	LEU 729	ILE 914
F	THR 1335	PRO 1640
G	ILE 1	THR 13
H	ILE 1	THR 13

There are 36 helices in PDB entry 2QKI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	263	266	Right-handed 310
Helix 2	2	A	281	288	Right-handed alpha
Helix 3	3	A	294	298	Right-handed 310
Helix 4	4	A	372	376	Right-handed 310
Helix 5	5	A	461	465	Right-handed 310
Helix 6	6	A	500	504	Right-handed 310
Helix 7	7	A	578	584	Right-handed alpha
Helix 8	8	A	590	601	Right-handed alpha
Helix 9	9	A	612	620	Right-handed alpha
Helix 10	10	B	735	739	Right-handed 310
Helix 11	11	C	1392	1401	Right-handed alpha
Helix 12	12	C	1408	1413	Right-handed alpha
Helix 13	13	C	1415	1419	Right-handed 310
Helix 14	14	C	1475	1479	Right-handed 310
Helix 15	15	C	1508	1515	Right-handed alpha
Helix 16	16	C	1568	1573	Right-handed alpha
Helix 17	17	C	1611	1616	Right-handed alpha
Helix 18	18	C	1620	1637	Right-handed alpha
Helix 19	19	D	281	290	Right-handed alpha
Helix 20	20	D	293	298	Right-handed 310
Helix 21	21	D	461	465	Right-handed 310
Helix 22	22	D	500	504	Right-handed 310
Helix 23	23	D	578	584	Right-handed alpha
Helix 24	24	D	590	601	Right-handed alpha
Helix 25	25	D	612	620	Right-handed alpha
Helix 26	26	E	735	739	Right-handed 310
Helix 27	27	F	1392	1400	Right-handed alpha
Helix 28	28	F	1408	1413	Right-handed alpha
Helix 29	29	F	1415	1419	Right-handed 310
Helix 30	30	F	1475	1479	Right-handed 310
Helix 31	31	F	1506	1514	Right-handed alpha
Helix 32	32	F	1568	1573	Right-handed alpha
Helix 33	33	F	1587	1589	Right-handed 310
Helix 34	34	F	1611	1615	Right-handed 310
Helix 35	35	F	1617	1621	Right-handed 310
Helix 36	36	F	1622	1637	Right-handed alpha

There are 39 sheets in PDB entry 2QKI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	17	25	anti-parallel
Strand 3	A	3	9	anti-parallel
Strand 4	A	622	626	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	93	102	parallel
Strand 3	A	82	90	anti-parallel
Strand 4	A	31	39	anti-parallel
Strand 5	A	51	54	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	112	first strand
Strand 2	A	122	130	anti-parallel
Strand 3	A	166	172	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	196	202	parallel
Strand 3	A	180	188	anti-parallel
Strand 4	A	140	146	anti-parallel
Strand 5	A	152	159	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	216	first strand
Strand 2	A	229	237	anti-parallel
Strand 3	A	275	280	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	316	327	parallel
Strand 3	A	301	310	anti-parallel
Strand 4	A	245	254	anti-parallel
Strand 5	A	259	261	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	316	327	parallel
Strand 3	A	301	310	anti-parallel
Strand 4	A	245	254	anti-parallel
Strand 5	A	267	271	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	347	355	anti-parallel
Strand 3	A	384	390	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	416	423	parallel
Strand 3	A	398	404	anti-parallel
Strand 4	A	366	369	anti-parallel
Strand 5	A	377	378	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	437	first strand
Strand 2	A	447	456	anti-parallel
Strand 3	A	492	499	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	485	first strand
Strand 2	A	467	474	anti-parallel
Strand 3	A	506	516	anti-parallel
Strand 4	A	522	532	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	545	first strand
Strand 2	A	558	566	anti-parallel
Strand 3	B	764	772	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	748	749	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	B	779	788	anti-parallel
Strand 4	B	792	795	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	755	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	B	779	788	anti-parallel
Strand 4	B	799	802	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	807	812	first strand
Strand 2	B	823	831	anti-parallel
Strand 3	B	870	880	anti-parallel
Strand 4	B	850	851	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	816	818	first strand
Strand 2	B	900	910	parallel
Strand 3	B	884	894	anti-parallel
Strand 4	B	838	844	anti-parallel
Strand 5	B	860	866	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1339	1347	first strand
Strand 2	C	1361	1370	anti-parallel
Strand 3	C	1435	1443	anti-parallel
Strand 4	C	1389	1391	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1405	1406	first strand
Strand 2	C	1421	1426	anti-parallel
Strand 3	C	1379	1384	anti-parallel
Strand 4	C	1453	1459	anti-parallel
Strand 5	C	1462	1471	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1482	1485	first strand
Strand 2	C	1488	1491	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1598	1599	first strand
Strand 2	C	1559	1565	parallel
Strand 3	C	1536	1548	anti-parallel
Strand 4	C	1519	1531	anti-parallel
Strand 5	C	1579	1585	anti-parallel
Strand 6	C	1605	1609	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	66	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	3	9	anti-parallel
Strand 4	D	622	626	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	93	101	parallel
Strand 3	D	83	90	anti-parallel
Strand 4	D	31	39	anti-parallel
Strand 5	D	51	54	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	112	first strand
Strand 2	D	122	130	anti-parallel
Strand 3	D	166	172	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	196	202	parallel
Strand 3	D	180	188	anti-parallel
Strand 4	D	140	146	anti-parallel
Strand 5	D	152	159	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	216	first strand
Strand 2	D	229	237	anti-parallel
Strand 3	D	275	280	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	316	327	parallel
Strand 3	D	301	310	anti-parallel
Strand 4	D	245	255	anti-parallel
Strand 5	D	258	271	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	334	first strand
Strand 2	D	347	355	anti-parallel
Strand 3	D	384	390	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	342	first strand
Strand 2	D	416	423	parallel
Strand 3	D	398	404	anti-parallel
Strand 4	D	366	369	anti-parallel
Strand 5	D	377	378	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	433	437	first strand
Strand 2	D	448	456	anti-parallel
Strand 3	D	492	498	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	485	first strand
Strand 2	D	467	474	anti-parallel
Strand 3	D	506	516	anti-parallel
Strand 4	D	522	532	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	545	first strand
Strand 2	D	558	566	anti-parallel
Strand 3	E	764	772	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	748	755	first strand
Strand 2	D	570	577	anti-parallel
Strand 3	E	779	788	anti-parallel
Strand 4	E	792	795	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	748	755	first strand
Strand 2	D	570	577	anti-parallel
Strand 3	E	779	788	anti-parallel
Strand 4	E	799	802	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	807	812	first strand
Strand 2	E	823	831	anti-parallel
Strand 3	E	870	880	anti-parallel
Strand 4	E	850	851	anti-parallel

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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	816	818	first strand
Strand 2	E	900	910	parallel
Strand 3	E	884	894	anti-parallel
Strand 4	E	838	844	anti-parallel
Strand 5	E	860	866	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1339	1347	first strand
Strand 2	F	1361	1370	anti-parallel
Strand 3	F	1435	1443	anti-parallel
Strand 4	F	1389	1391	anti-parallel

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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1405	1406	first strand
Strand 2	F	1421	1426	anti-parallel
Strand 3	F	1379	1384	anti-parallel
Strand 4	F	1453	1459	anti-parallel
Strand 5	F	1467	1471	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1482	1485	first strand
Strand 2	F	1488	1491	anti-parallel

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There are 6 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1598	1599	first strand
Strand 2	F	1559	1565	parallel
Strand 3	F	1536	1548	anti-parallel
Strand 4	F	1519	1531	anti-parallel
Strand 5	F	1579	1585	anti-parallel
Strand 6	F	1605	1609	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2QKI

Analysis of interatomic Contacts of Structural Units in PDB entry:
2QKI