Analysis of interatomic Contacts of Structural Units in PDB entry:
2QLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QLY entry

There is 1 chain in PDB entry 2QLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7HIS 870
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2QLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
22 30Right-handed alpha
Helix 3
3
A
155 157Right-handed 310
Helix 4
4
A
269 282Right-handed alpha
Helix 5
5
A
288 292Right-handed 310
Helix 6
6
A
303 317Right-handed alpha
Helix 7
7
A
327 331Right-handed 310
Helix 8
8
A
346 357Right-handed alpha
Helix 9
9
A
379 389Right-handed alpha
Helix 10
10
A
417 435Right-handed alpha
Helix 11
11
A
493 497Right-handed alpha
Helix 12
12
A
499 516Right-handed alpha
Helix 13
13
A
531 535Right-handed 310
Helix 14
14
A
546 563Right-handed alpha
Helix 15
15
A
580 592Right-handed alpha
Helix 16
16
A
609 614Right-handed 310
Helix 17
17
A
617 633Right-handed alpha
Helix 18
18
A
633 647Right-handed alpha
Helix 19
19
A
654 660Right-handed alpha
Helix 20
20
A
662 666Right-handed 310
Helix 21
21
A
743 748Right-handed alpha
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There are 12 sheets in PDB entry 2QLY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
44 45anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
59 60anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
84 93anti-parallel
Strand 4
A
96 103anti-parallel
Strand 5
A
260 267anti-parallel
Strand 6
A
230 235anti-parallel
Strand 7
A
217 223anti-parallel
Strand 8
A
177 181anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
139 144anti-parallel
Strand 3
A
150 153anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
241 246anti-parallel
Strand 5
A
195 199anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 569first strand
Strand 2
A
537 539parallel
Strand 3
A
523 525parallel
Strand 4
A
439 442parallel
Strand 5
A
360 365parallel
Strand 6
A
323 326parallel
Strand 7
A
294 296parallel
Strand 8
A
597 599parallel
Strand 9
A
571 572parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
408 411anti-parallel
Strand 3
A
403 405anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
491 492anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 653first strand
Strand 2
A
672 674anti-parallel
Strand 3
A
678 681anti-parallel
Strand 4
A
726 730anti-parallel
Strand 5
A
700 702anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
690 695first strand
Strand 2
A
714 719anti-parallel
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There are 11 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
834 835first strand
Strand 2
A
825 831anti-parallel
Strand 3
A
864 869anti-parallel
Strand 4
A
795 803anti-parallel
Strand 5
A
785 792anti-parallel
Strand 6
A
763 770anti-parallel
Strand 7
A
733 738parallel
Strand 8
A
752 757anti-parallel
Strand 9
A
812 819parallel
Strand 10
A
850 854anti-parallel
Strand 11
A
841 845anti-parallel
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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
834 835first strand
Strand 2
A
825 831anti-parallel
Strand 3
A
864 869anti-parallel
Strand 4
A
795 803anti-parallel
Strand 5
A
785 792anti-parallel
Strand 6
A
763 770anti-parallel
Strand 7
A
733 738parallel
Strand 8
A
752 757anti-parallel
Strand 9
A
812 819parallel
Strand 10
A
858 859anti-parallel
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