Analysis of interatomic Contacts of Structural Units in PDB entry:
2QML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QML entry

There is 1 chain in PDB entry 2QML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5PHE 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2QML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 29Right-handed 310
Helix 2
2
A
30 38Right-handed alpha
Helix 3
3
A
43 48Right-handed alpha
Helix 4
4
A
52 65Right-handed alpha
Helix 5
5
A
90 98Right-handed 310
Helix 6
6
A
113 117Right-handed 310
Helix 7
7
A
121 135Right-handed alpha
Helix 8
8
A
150 160Right-handed alpha
Helix 9
9
A
182 194Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2QML.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
69 76anti-parallel
Strand 4
A
79 88anti-parallel
Strand 5
A
105 111anti-parallel
Strand 6
A
141 144parallel
Strand 7
A
174 181anti-parallel
Strand 8
A
163 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il