Analysis of interatomic Contacts of Structural Units in PDB entry:
2QMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QMO entry

There is 1 chain in PDB entry 2QMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LYS 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2QMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 27Right-handed alpha
Helix 2
2
A
49 59Right-handed alpha
Helix 3
3
A
66 71Right-handed alpha
Helix 4
4
A
80 89Right-handed alpha
Helix 5
5
A
95 106Right-handed alpha
Helix 6
6
A
107 109Right-handed 310
Helix 7
7
A
130 139Right-handed alpha
Helix 8
8
A
151 165Right-handed alpha
Helix 9
9
A
182 187Right-handed alpha
Helix 10
10
A
187 198Right-handed alpha
Helix 11
11
A
208 218Right-handed alpha
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There are 2 sheets in PDB entry 2QMO. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
112 116parallel
Strand 3
A
1 6parallel
Strand 4
A
141 146parallel
Strand 5
A
170 174parallel
Strand 6
A
203 204parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
73 74parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il