Analysis of interatomic Contacts of Structural Units in PDB entry:
2QMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QMQ entry

There is 1 chain in PDB entry 2QMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3GLY 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 2QMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 84Right-handed alpha
Helix 2
2
A
85 93Right-handed alpha
Helix 3
3
A
120 127Right-handed alpha
Helix 4
4
A
127 136Right-handed alpha
Helix 5
5
A
146 159Right-handed alpha
Helix 6
6
A
177 189Right-handed alpha
Helix 7
7
A
192 202Right-handed alpha
Helix 8
8
A
203 209Right-handed alpha
Helix 9
9
A
211 223Right-handed alpha
Helix 10
10
A
226 239Right-handed alpha
Helix 11
11
A
267 278Right-handed alpha
Helix 12
12
A
279 281Right-handed 310
Helix 13
13
A
294 299Right-handed alpha
Helix 14
14
A
299 312Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2QMQ. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-2 45first strand
Strand 2
A
48 55anti-parallel
Strand 3
A
97 101anti-parallel
Strand 4
A
64 68parallel
Strand 5
A
140 145parallel
Strand 6
A
163 169parallel
Strand 7
A
257 262parallel
Strand 8
A
283 288parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
250 251anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il