Analysis of interatomic Contacts of Structural Units in PDB entry:
2QQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QQ8 entry

There is 1 chain in PDB entry 2QQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 353LYS 664
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 2QQ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
357 365Right-handed alpha
Helix 2
2
A
366 370Right-handed 310
Helix 3
3
A
376 385Right-handed alpha
Helix 4
4
A
388 401Right-handed alpha
Helix 5
5
A
407 422Right-handed alpha
Helix 6
6
A
446 457Right-handed alpha
Helix 7
7
A
458 463Right-handed 310
Helix 8
8
A
471 486Right-handed alpha
Helix 9
9
A
494 506Right-handed alpha
Helix 10
10
A
507 520Right-handed alpha
Helix 11
11
A
521 529Right-handed alpha
Helix 12
12
A
532 550Right-handed alpha
Helix 13
13
A
550 560Right-handed alpha
Helix 14
14
A
563 566Right-handed 310
Helix 15
15
A
567 574Right-handed alpha
Helix 16
16
A
581 596Right-handed alpha
Helix 17
17
A
596 611Right-handed alpha
Helix 18
18
A
611 617Right-handed alpha
Helix 19
19
A
619 629Right-handed alpha
Helix 20
20
A
635 646Right-handed alpha
Helix 21
21
A
655 664Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 2QQ8.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 650first strand
Strand 2
A
653 654anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il