Analysis of interatomic Contacts of Structural Units in PDB entry:
2QTG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QTG entry

There are 2 chains in PDB entry 2QTG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 22LEU 267
B
 LEU 23LEU 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2QTG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 47Right-handed alpha
Helix 2
2
A
91 107Right-handed alpha
Helix 3
3
A
121 124Right-handed 310
Helix 4
4
A
147 154Right-handed alpha
Helix 5
5
A
161 169Right-handed alpha
Helix 6
6
A
184 194Right-handed alpha
Helix 7
7
A
202 213Right-handed alpha
Helix 8
8
A
233 260Right-handed alpha
Helix 9
9
A
263 267Right-handed 310
Helix 10
10
B
35 46Right-handed alpha
Helix 11
11
B
91 107Right-handed alpha
Helix 12
12
B
121 124Right-handed 310
Helix 13
13
B
147 154Right-handed alpha
Helix 14
14
B
161 169Right-handed alpha
Helix 15
15
B
184 194Right-handed alpha
Helix 16
16
B
202 213Right-handed alpha
Helix 17
17
B
232 260Right-handed alpha
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There are 4 sheets in PDB entry 2QTG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
72 78anti-parallel
Strand 4
A
28 32parallel
Strand 5
A
110 119parallel
Strand 6
A
198 200anti-parallel
Strand 7
A
172 177parallel
Strand 8
A
130 138parallel
Strand 9
A
156 157anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
72 78anti-parallel
Strand 4
A
28 32parallel
Strand 5
A
110 119parallel
Strand 6
A
217 226parallel
Strand 7
A
130 138anti-parallel
Strand 8
A
156 157anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
63 69anti-parallel
Strand 3
B
72 78anti-parallel
Strand 4
B
28 32parallel
Strand 5
B
110 119parallel
Strand 6
B
198 200anti-parallel
Strand 7
B
171 177parallel
Strand 8
B
130 138parallel
Strand 9
B
156 157anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
63 69anti-parallel
Strand 3
B
72 78anti-parallel
Strand 4
B
28 32parallel
Strand 5
B
110 119parallel
Strand 6
B
217 226parallel
Strand 7
B
130 138anti-parallel
Strand 8
B
156 157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il