Analysis of interatomic Contacts of Structural Units in PDB entry:
2QV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QV5 entry

There are 2 chains in PDB entry 2QV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 148VAL 393
B
 LEU 148VAL 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2QV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
160 165Right-handed alpha
Helix 2
2
A
187 198Right-handed alpha
Helix 3
3
A
212 224Right-handed alpha
Helix 4
4
A
253 266Right-handed alpha
Helix 5
5
A
281 284Right-handed 310
Helix 6
6
A
285 299Right-handed alpha
Helix 7
7
A
313 322Right-handed alpha
Helix 8
8
A
337 356Right-handed alpha
Helix 9
9
A
365 379Right-handed alpha
Helix 10
10
A
380 382Right-handed 310
Helix 11
11
A
388 393Right-handed alpha
Helix 12
12
B
160 165Right-handed alpha
Helix 13
13
B
187 198Right-handed alpha
Helix 14
14
B
212 224Right-handed alpha
Helix 15
15
B
253 266Right-handed alpha
Helix 16
16
B
279 284Right-handed alpha
Helix 17
17
B
285 299Right-handed alpha
Helix 18
18
B
313 322Right-handed alpha
Helix 19
19
B
337 356Right-handed alpha
Helix 20
20
B
365 380Right-handed alpha
Helix 21
21
B
388 393Right-handed alpha
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There are 4 sheets in PDB entry 2QV5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
302 305parallel
Strand 3
A
273 278parallel
Strand 4
A
227 233parallel
Strand 5
A
203 207parallel
Strand 6
A
175 184parallel
Strand 7
A
357 363parallel
Strand 8
A
330 331parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
302 305parallel
Strand 3
A
273 278parallel
Strand 4
A
227 233parallel
Strand 5
A
203 207parallel
Strand 6
A
175 184parallel
Strand 7
A
384 386parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 327first strand
Strand 2
B
302 305parallel
Strand 3
B
273 278parallel
Strand 4
B
227 233parallel
Strand 5
B
203 207parallel
Strand 6
B
175 184parallel
Strand 7
B
357 363parallel
Strand 8
B
330 331parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 327first strand
Strand 2
B
302 305parallel
Strand 3
B
273 278parallel
Strand 4
B
227 233parallel
Strand 5
B
203 207parallel
Strand 6
B
175 184parallel
Strand 7
B
384 386parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il