Analysis of interatomic Contacts of Structural Units in PDB entry:
2QV7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QV7 entry

There is 1 chain in PDB entry 2QV7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3LEU 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2QV7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 32Right-handed alpha
Helix 2
2
A
45 55Right-handed alpha
Helix 3
3
A
67 79Right-handed alpha
Helix 4
4
A
96 102Right-handed alpha
Helix 5
5
A
107 118Right-handed alpha
Helix 6
6
A
158 162Right-handed 310
Helix 7
7
A
169 173Right-handed 310
Helix 8
8
A
228 240Right-handed alpha
Helix 9
9
A
241 242Right-handed 310
Helix 10
10
A
243 247Right-handed 310
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There are 3 sheets in PDB entry 2QV7. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 40first strand
Strand 2
A
3 9parallel
Strand 3
A
61 66parallel
Strand 4
A
86 91parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
120 128anti-parallel
Strand 3
A
280 292anti-parallel
Strand 4
A
257 261anti-parallel
Strand 5
A
176 182anti-parallel
Strand 6
A
185 197anti-parallel
Strand 7
A
219 225anti-parallel
Strand 8
A
250 255anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
120 128anti-parallel
Strand 3
A
280 292anti-parallel
Strand 4
A
257 261anti-parallel
Strand 5
A
176 182anti-parallel
Strand 6
A
185 197anti-parallel
Strand 7
A
136 140anti-parallel
Strand 8
A
267 270anti-parallel
Strand 9
A
273 277anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il