Analysis of interatomic Contacts of Structural Units in PDB entry:
2QVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QVJ entry

There are 3 chains in PDB entry 2QVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 422
B
 SER 2LYS 422
C
 SER 2LYS 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 98 helices in PDB entry 2QVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 32Right-handed alpha
Helix 2
2
A
47 62Right-handed alpha
Helix 3
3
A
65 77Right-handed alpha
Helix 4
4
A
133 146Right-handed alpha
Helix 5
5
A
151 165Right-handed alpha
Helix 6
6
A
179 188Right-handed alpha
Helix 7
7
A
188 205Right-handed alpha
Helix 8
8
A
208 212Right-handed 310
Helix 9
9
A
213 218Right-handed alpha
Helix 10
10
A
219 221Right-handed 310
Helix 11
11
A
225 239Right-handed alpha
Helix 12
12
A
241 248Right-handed alpha
Helix 13
13
A
251 262Right-handed alpha
Helix 14
14
A
274 278Right-handed 310
Helix 15
15
A
294 308Right-handed alpha
Helix 16
16
A
312 316Right-handed 310
Helix 17
17
A
323 341Right-handed alpha
Helix 18
18
A
374 385Right-handed alpha
Helix 19
19
A
390 402Right-handed alpha
Helix 20
20
A
411 421Right-handed alpha
Helix 21
21
B
27 35Right-handed alpha
Helix 22
22
B
47 61Right-handed alpha
Helix 23
23
B
65 78Right-handed alpha
Helix 24
24
B
133 146Right-handed alpha
Helix 25
25
B
151 165Right-handed alpha
Helix 26
26
B
176 180Right-handed 310
Helix 27
27
B
184 187Right-handed 310
Helix 28
28
B
188 205Right-handed alpha
Helix 29
29
B
208 212Right-handed 310
Helix 30
30
B
213 218Right-handed alpha
Helix 31
31
B
219 221Right-handed 310
Helix 32
32
B
225 239Right-handed alpha
Helix 33
33
B
241 247Right-handed alpha
Helix 34
34
B
251 262Right-handed alpha
Helix 35
35
B
274 278Right-handed 310
Helix 36
36
B
294 308Right-handed alpha
Helix 37
37
B
323 341Right-handed alpha
Helix 38
38
B
374 384Right-handed alpha
Helix 39
39
B
390 403Right-handed alpha
Helix 40
40
B
411 421Right-handed alpha
Helix 41
41
C
27 32Right-handed alpha
Helix 42
42
C
47 62Right-handed alpha
Helix 43
43
C
65 77Right-handed alpha
Helix 44
44
C
133 145Right-handed alpha
Helix 45
45
C
151 165Right-handed alpha
Helix 46
46
C
183 187Right-handed 310
Helix 47
47
C
188 205Right-handed alpha
Helix 48
48
C
210 215Right-handed 310
Helix 49
49
C
217 221Right-handed 310
Helix 50
50
C
225 239Right-handed alpha
Helix 51
51
C
241 248Right-handed alpha
Helix 52
52
C
251 262Right-handed alpha
Helix 53
53
C
274 278Right-handed 310
Helix 54
54
C
294 308Right-handed alpha
Helix 55
55
C
323 340Right-handed alpha
Helix 56
56
C
374 384Right-handed alpha
Helix 57
57
C
390 403Right-handed alpha
Helix 58
58
C
411 421Right-handed alpha
Helix 59
59
D
27 35Right-handed alpha
Helix 60
60
D
47 62Right-handed alpha
Helix 61
61
D
65 77Right-handed alpha
Helix 62
62
D
133 147Right-handed alpha
Helix 63
63
D
151 165Right-handed alpha
Helix 64
64
D
176 181Right-handed 310
Helix 65
65
D
183 187Right-handed 310
Helix 66
66
D
188 205Right-handed alpha
Helix 67
67
D
210 215Right-handed 310
Helix 68
68
D
217 221Right-handed 310
Helix 69
69
D
225 239Right-handed alpha
Helix 70
70
D
241 247Right-handed alpha
Helix 71
71
D
251 262Right-handed alpha
Helix 72
72
D
274 278Right-handed 310
Helix 73
73
D
294 308Right-handed alpha
Helix 74
74
D
323 341Right-handed alpha
Helix 75
75
D
374 385Right-handed alpha
Helix 76
76
D
392 402Right-handed alpha
Helix 77
77
D
411 421Right-handed alpha
Helix 78
78
E
27 32Right-handed alpha
Helix 79
79
E
47 61Right-handed alpha
Helix 80
80
E
65 78Right-handed alpha
Helix 81
81
E
133 145Right-handed alpha
Helix 82
82
E
151 165Right-handed alpha
Helix 83
83
E
179 184Right-handed alpha
Helix 84
84
E
185 187Right-handed 310
Helix 85
85
E
188 205Right-handed alpha
Helix 86
86
E
208 212Right-handed 310
Helix 87
87
E
213 218Right-handed alpha
Helix 88
88
E
219 221Right-handed 310
Helix 89
89
E
225 239Right-handed alpha
Helix 90
90
E
241 247Right-handed alpha
Helix 91
91
E
251 262Right-handed alpha
Helix 92
92
E
274 278Right-handed 310
Helix 93
93
E
294 308Right-handed alpha
Helix 94
94
E
311 315Right-handed 310
Helix 95
95
E
323 340Right-handed alpha
Helix 96
96
E
374 384Right-handed alpha
Helix 97
97
E
390 402Right-handed alpha
Helix 98
98
E
411 421Right-handed alpha
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There are 18 sheets in PDB entry 2QVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
5 7anti-parallel
Strand 3
C
348 349anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
109 110parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
101 103anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
93 96anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
5 7anti-parallel
Strand 3
D
348 349anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
109 110parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
101 103anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
93 96anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 349first strand
Strand 2
E
5 7anti-parallel
Strand 3
E
12 14anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
13 14anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 41first strand
Strand 2
C
109 110parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 83first strand
Strand 2
C
101 102anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 90first strand
Strand 2
C
93 96anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 42first strand
Strand 2
D
110 111parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 90first strand
Strand 2
D
93 96anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
108 110parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
81 83first strand
Strand 2
E
101 103anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
89 90first strand
Strand 2
E
93 94anti-parallel
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