Analysis of interatomic Contacts of Structural Units in PDB entry:
2QVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QVP entry

There are 3 chains in PDB entry 2QVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7GLU 272
B
 PHE 6GLU 272
C
 PHE 6SER 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2QVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 38Right-handed alpha
Helix 2
2
A
78 91Right-handed alpha
Helix 3
3
A
93 98Right-handed 310
Helix 4
4
A
108 115Right-handed alpha
Helix 5
5
A
143 152Right-handed alpha
Helix 6
6
A
152 160Right-handed alpha
Helix 7
7
A
188 200Right-handed alpha
Helix 8
8
A
227 235Right-handed alpha
Helix 9
9
A
250 270Right-handed alpha
Helix 10
10
B
22 38Right-handed alpha
Helix 11
11
B
78 91Right-handed alpha
Helix 12
12
B
93 98Right-handed 310
Helix 13
13
B
108 115Right-handed alpha
Helix 14
14
B
143 152Right-handed alpha
Helix 15
15
B
152 160Right-handed alpha
Helix 16
16
B
188 200Right-handed alpha
Helix 17
17
B
227 235Right-handed alpha
Helix 18
18
B
250 270Right-handed alpha
Helix 19
19
C
22 38Right-handed alpha
Helix 20
20
C
78 90Right-handed alpha
Helix 21
21
C
93 98Right-handed 310
Helix 22
22
C
108 115Right-handed alpha
Helix 23
23
C
143 152Right-handed alpha
Helix 24
24
C
152 160Right-handed alpha
Helix 25
25
C
188 200Right-handed alpha
Helix 26
26
C
227 235Right-handed alpha
Helix 27
27
C
250 270Right-handed alpha
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There are 12 sheets in PDB entry 2QVP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
18 19anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 47first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
100 104anti-parallel
Strand 4
A
66 71parallel
Strand 5
A
164 170parallel
Strand 6
A
240 246parallel
Strand 7
A
177 181anti-parallel
Strand 8
A
219 221parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
135 137anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
213 215anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
18 19anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 47first strand
Strand 2
B
50 56anti-parallel
Strand 3
B
100 104anti-parallel
Strand 4
B
66 71parallel
Strand 5
B
163 170parallel
Strand 6
B
240 246parallel
Strand 7
B
177 181anti-parallel
Strand 8
B
219 221parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
135 137anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
213 215anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
18 19anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 47first strand
Strand 2
C
50 56anti-parallel
Strand 3
C
100 104anti-parallel
Strand 4
C
66 71parallel
Strand 5
C
163 170parallel
Strand 6
C
240 246parallel
Strand 7
C
177 181anti-parallel
Strand 8
C
219 221parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 132first strand
Strand 2
C
135 137anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 210first strand
Strand 2
C
213 215anti-parallel
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