Analysis of interatomic Contacts of Structural Units in PDB entry:
2QW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QW8 entry

There are 2 chains in PDB entry 2QW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5PHE 314
B
 GLY 5PHE 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2QW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 30Right-handed alpha
Helix 2
2
A
44 54Right-handed alpha
Helix 3
3
A
65 74Right-handed alpha
Helix 4
4
A
84 89Right-handed 310
Helix 5
5
A
90 102Right-handed alpha
Helix 6
6
A
122 142Right-handed alpha
Helix 7
7
A
155 164Right-handed alpha
Helix 8
8
A
186 200Right-handed alpha
Helix 9
9
A
201 204Right-handed 310
Helix 10
10
A
212 214Right-handed 310
Helix 11
11
A
219 231Right-handed alpha
Helix 12
12
A
240 251Right-handed alpha
Helix 13
13
A
255 267Right-handed alpha
Helix 14
14
A
284 286Right-handed 310
Helix 15
15
A
294 305Right-handed alpha
Helix 16
16
B
19 30Right-handed alpha
Helix 17
17
B
44 54Right-handed alpha
Helix 18
18
B
65 74Right-handed alpha
Helix 19
19
B
84 89Right-handed 310
Helix 20
20
B
90 102Right-handed alpha
Helix 21
21
B
122 142Right-handed alpha
Helix 22
22
B
155 164Right-handed alpha
Helix 23
23
B
186 198Right-handed alpha
Helix 24
24
B
199 204Right-handed 310
Helix 25
25
B
212 214Right-handed 310
Helix 26
26
B
219 231Right-handed alpha
Helix 27
27
B
240 251Right-handed alpha
Helix 28
28
B
255 267Right-handed alpha
Helix 29
29
B
284 286Right-handed 310
Helix 30
30
B
294 305Right-handed alpha
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There are 8 sheets in PDB entry 2QW8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
34 38parallel
Strand 3
A
10 13parallel
Strand 4
A
78 81parallel
Strand 5
A
106 108parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
206 209parallel
Strand 3
A
281 282parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
181 185parallel
Strand 3
A
216 218anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
235 239parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
34 38parallel
Strand 3
B
10 13parallel
Strand 4
B
78 81parallel
Strand 5
B
106 108parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 150first strand
Strand 2
B
206 209parallel
Strand 3
B
281 282parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
181 185parallel
Strand 3
B
216 218anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 175first strand
Strand 2
B
235 239parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il