Analysis of interatomic Contacts of Structural Units in PDB entry:
2QY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QY1 entry

There are 2 chains in PDB entry 2QY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 24GLU 353
B
 GLY 24GLU 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 2QY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 56Right-handed alpha
Helix 2
2
A
71 75Right-handed 310
Helix 3
3
A
77 81Right-handed 310
Helix 4
4
A
132 136Right-handed 310
Helix 5
5
A
209 214Right-handed 310
Helix 6
6
A
333 335Right-handed 310
Helix 7
7
A
336 345Right-handed alpha
Helix 8
8
B
45 56Right-handed alpha
Helix 9
9
B
71 75Right-handed 310
Helix 10
10
B
77 81Right-handed 310
Helix 11
11
B
132 136Right-handed 310
Helix 12
12
B
209 214Right-handed 310
Helix 13
13
B
333 335Right-handed 310
Helix 14
14
B
336 345Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 2QY1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
62 66parallel
Strand 3
A
97 101parallel
Strand 4
A
118 123parallel
Strand 5
A
150 155parallel
Strand 6
A
185 190parallel
Strand 7
A
216 220parallel
Strand 8
A
238 242parallel
Strand 9
A
261 265parallel
Strand 10
A
286 290parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
110 114parallel
Strand 3
A
139 142parallel
Strand 4
A
178 181parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
158 160parallel
Strand 3
A
193 199parallel
Strand 4
A
223 229parallel
Strand 5
A
245 249parallel
Strand 6
A
268 273parallel
Strand 7
A
293 294parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
158 160parallel
Strand 3
A
193 199parallel
Strand 4
A
223 229parallel
Strand 5
A
245 249parallel
Strand 6
A
268 273parallel
Strand 7
A
298 299parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
233 235parallel
Strand 3
A
254 257parallel
Strand 4
A
276 278parallel
Strand 5
A
310 311anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
62 66parallel
Strand 3
B
97 101parallel
Strand 4
B
118 123parallel
Strand 5
B
150 155parallel
Strand 6
B
185 190parallel
Strand 7
B
216 220parallel
Strand 8
B
238 242parallel
Strand 9
B
261 265parallel
Strand 10
B
286 290parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 92first strand
Strand 2
B
110 114parallel
Strand 3
B
139 142parallel
Strand 4
B
178 181parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
158 160parallel
Strand 3
B
193 199parallel
Strand 4
B
223 229parallel
Strand 5
B
245 249parallel
Strand 6
B
268 273parallel
Strand 7
B
293 294parallel
Back to list of sheets
Back to top of page

There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
158 160parallel
Strand 3
B
193 199parallel
Strand 4
B
223 229parallel
Strand 5
B
245 249parallel
Strand 6
B
268 273parallel
Strand 7
B
298 299parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 203first strand
Strand 2
B
233 235parallel
Strand 3
B
254 257parallel
Strand 4
B
276 278parallel
Strand 5
B
310 311anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il