Analysis of interatomic Contacts of Structural Units in PDB entry:
2QY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QY2 entry

There are 2 chains in PDB entry 2QY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11ASP 237
B
 ILE 1014ASP 1237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 2QY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 33Right-handed alpha
Helix 2
2
A
46 61Right-handed alpha
Helix 3
3
A
62 64Right-handed 310
Helix 4
4
A
90 102Right-handed alpha
Helix 5
5
A
105 114Right-handed alpha
Helix 6
6
A
138 140Right-handed 310
Helix 7
7
A
201 205Right-handed 310
Helix 8
8
A
220 236Right-handed alpha
Helix 9
9
B
1016 1032Right-handed alpha
Helix 10
10
B
1046 1061Right-handed alpha
Helix 11
11
B
1062 1064Right-handed 310
Helix 12
12
B
1090 1102Right-handed alpha
Helix 13
13
B
1107 1116Right-handed alpha
Helix 14
14
B
1198 1204Right-handed 310
Helix 15
15
B
1220 1236Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2QY2. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 45first strand
Strand 2
A
142 152anti-parallel
Strand 3
A
122 137anti-parallel
Strand 4
A
83 88anti-parallel
Strand 5
A
66 77anti-parallel
Strand 6
A
169 183anti-parallel
Strand 7
A
186 196anti-parallel
Strand 8
A
208 215anti-parallel
Strand 9
A
36 45anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1134 1137first strand
Strand 2
B
1142 1151anti-parallel
Strand 3
B
1122 1127anti-parallel
Strand 4
B
1083 1088anti-parallel
Strand 5
B
1066 1077anti-parallel
Strand 6
B
1169 1181anti-parallel
Strand 7
B
1186 1196anti-parallel
Strand 8
B
1208 1215anti-parallel
Strand 9
B
1036 1042anti-parallel
Strand 10
B
1142 1151anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il