Analysis of interatomic Contacts of Structural Units in PDB entry:
2QY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QY6 entry

There are 2 chains in PDB entry 2QY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20GLU 265
B
 SER 20GLU 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 2QY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 66Right-handed alpha
Helix 2
2
A
67 72Right-handed alpha
Helix 3
3
A
73 75Right-handed 310
Helix 4
4
A
90 107Right-handed alpha
Helix 5
5
A
126 135Right-handed alpha
Helix 6
6
A
136 139Right-handed 310
Helix 7
7
A
140 150Right-handed alpha
Helix 8
8
A
176 181Right-handed alpha
Helix 9
9
A
182 184Right-handed 310
Helix 10
10
A
185 189Right-handed 310
Helix 11
11
A
205 209Right-handed 310
Helix 12
12
A
210 220Right-handed alpha
Helix 13
13
A
233 244Right-handed alpha
Helix 14
14
B
53 62Right-handed alpha
Helix 15
15
B
62 67Right-handed alpha
Helix 16
16
B
67 72Right-handed alpha
Helix 17
17
B
73 75Right-handed 310
Helix 18
18
B
90 107Right-handed alpha
Helix 19
19
B
126 135Right-handed alpha
Helix 20
20
B
136 139Right-handed 310
Helix 21
21
B
140 150Right-handed alpha
Helix 22
22
B
176 181Right-handed alpha
Helix 23
23
B
182 184Right-handed 310
Helix 24
24
B
185 189Right-handed 310
Helix 25
25
B
205 209Right-handed 310
Helix 26
26
B
210 220Right-handed alpha
Helix 27
27
B
233 244Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2QY6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
39 41anti-parallel
Strand 3
A
46 47anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 163first strand
Strand 2
A
168 174anti-parallel
Strand 3
A
114 121parallel
Strand 4
A
79 84parallel
Strand 5
A
192 197parallel
Strand 6
A
221 229parallel
Strand 7
A
259 264anti-parallel
Strand 8
A
245 250anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
39 41anti-parallel
Strand 3
B
46 47anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 163first strand
Strand 2
B
168 174anti-parallel
Strand 3
B
114 121parallel
Strand 4
B
79 84parallel
Strand 5
B
192 197parallel
Strand 6
B
221 229parallel
Strand 7
B
259 263anti-parallel
Strand 8
B
246 250anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il