Analysis of interatomic Contacts of Structural Units in PDB entry:
2QYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QYO entry

There are 2 chains in PDB entry 2QYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5PRO 357
B
 ASN 6PRO 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 2QYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 25Right-handed alpha
Helix 2
2
A
26 39Right-handed alpha
Helix 3
3
A
40 49Right-handed alpha
Helix 4
4
A
54 62Right-handed alpha
Helix 5
5
A
64 66Right-handed 310
Helix 6
6
A
67 81Right-handed alpha
Helix 7
7
A
102 107Right-handed alpha
Helix 8
8
A
116 124Right-handed alpha
Helix 9
9
A
125 130Right-handed alpha
Helix 10
10
A
131 133Right-handed 310
Helix 11
11
A
134 140Right-handed alpha
Helix 12
12
A
145 152Right-handed alpha
Helix 13
13
A
154 161Right-handed alpha
Helix 14
14
A
162 185Right-handed alpha
Helix 15
15
A
187 192Right-handed alpha
Helix 16
16
A
205 215Right-handed alpha
Helix 17
17
A
225 230Right-handed alpha
Helix 18
18
A
260 264Right-handed 310
Helix 19
19
A
265 281Right-handed alpha
Helix 20
20
A
302 318Right-handed alpha
Helix 21
21
A
326 336Right-handed alpha
Helix 22
22
B
9 25Right-handed alpha
Helix 23
23
B
26 39Right-handed alpha
Helix 24
24
B
40 49Right-handed alpha
Helix 25
25
B
54 62Right-handed alpha
Helix 26
26
B
64 66Right-handed 310
Helix 27
27
B
67 81Right-handed alpha
Helix 28
28
B
102 107Right-handed alpha
Helix 29
29
B
116 124Right-handed alpha
Helix 30
30
B
125 130Right-handed alpha
Helix 31
31
B
131 133Right-handed 310
Helix 32
32
B
134 140Right-handed alpha
Helix 33
33
B
145 152Right-handed alpha
Helix 34
34
B
154 162Right-handed alpha
Helix 35
35
B
165 185Right-handed alpha
Helix 36
36
B
187 192Right-handed alpha
Helix 37
37
B
205 215Right-handed alpha
Helix 38
38
B
225 230Right-handed alpha
Helix 39
39
B
260 264Right-handed 310
Helix 40
40
B
265 280Right-handed alpha
Helix 41
41
B
302 318Right-handed alpha
Helix 42
42
B
326 336Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2QYO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
98 101anti-parallel
Strand 3
A
84 87anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 242first strand
Strand 2
A
219 224parallel
Strand 3
A
196 200parallel
Strand 4
A
254 258parallel
Strand 5
A
288 293parallel
Strand 6
A
351 356anti-parallel
Strand 7
A
340 345anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
324 325parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
98 101anti-parallel
Strand 3
B
84 87anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 242first strand
Strand 2
B
219 224parallel
Strand 3
B
196 200parallel
Strand 4
B
254 258parallel
Strand 5
B
288 293parallel
Strand 6
B
351 356anti-parallel
Strand 7
B
340 345anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 296first strand
Strand 2
B
324 325parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il