Analysis of interatomic Contacts of Structural Units in PDB entry:
2QYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QYT entry

There is 1 chain in PDB entry 2QYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4SER 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2QYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 31Right-handed alpha
Helix 2
2
A
42 53Right-handed alpha
Helix 3
3
A
74 79Right-handed alpha
Helix 4
4
A
92 101Right-handed alpha
Helix 5
5
A
118 124Right-handed alpha
Helix 6
6
A
168 181Right-handed alpha
Helix 7
7
A
190 213Right-handed alpha
Helix 8
8
A
215 223Right-handed alpha
Helix 9
9
A
223 242Right-handed alpha
Helix 10
10
A
248 260Right-handed alpha
Helix 11
11
A
284 294Right-handed alpha
Helix 12
12
A
298 307Right-handed alpha
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There are 3 sheets in PDB entry 2QYT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
35 40parallel
Strand 3
A
6 11parallel
Strand 4
A
81 86parallel
Strand 5
A
104 112parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
55 58anti-parallel
Strand 3
A
148 151parallel
Strand 4
A
141 145anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
157 161anti-parallel
Strand 3
A
185 186parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il