Analysis of interatomic Contacts of Structural Units in PDB entry:
2QYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QYU entry

There is 1 chain in PDB entry 2QYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 163ALA 782
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2QYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
169 186Right-handed alpha
Helix 2
2
A
206 210Right-handed 310
Helix 3
3
A
212 217Right-handed 310
Helix 4
4
A
338 347Right-handed alpha
Helix 5
5
A
355 362Right-handed alpha
Helix 6
6
A
363 366Right-handed 310
Helix 7
7
A
367 384Right-handed alpha
Helix 8
8
A
388 393Right-handed alpha
Helix 9
9
A
395 404Right-handed alpha
Helix 10
10
A
407 410Right-handed 310
Helix 11
11
A
411 434Right-handed alpha
Helix 12
12
A
442 449Right-handed alpha
Helix 13
13
A
449 460Right-handed alpha
Helix 14
14
A
462 467Right-handed alpha
Helix 15
15
A
467 481Right-handed alpha
Helix 16
16
A
485 502Right-handed alpha
Helix 17
17
A
505 509Right-handed 310
Helix 18
18
A
546 555Right-handed alpha
Helix 19
19
A
580 589Right-handed alpha
Helix 20
20
A
589 613Right-handed alpha
Helix 21
21
A
618 629Right-handed alpha
Helix 22
22
A
640 652Right-handed alpha
Helix 23
23
A
653 659Right-handed 310
Helix 24
24
A
661 672Right-handed alpha
Helix 25
25
A
678 697Right-handed alpha
Helix 26
26
A
709 727Right-handed alpha
Helix 27
27
A
728 731Right-handed 310
Helix 28
28
A
733 745Right-handed alpha
Helix 29
29
A
755 769Right-handed alpha
Helix 30
30
A
769 777Right-handed alpha
Helix 31
31
A
778 782Right-handed 310
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There are 4 sheets in PDB entry 2QYU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
242 244parallel
Strand 3
A
262 264parallel
Strand 4
A
284 289parallel
Strand 5
A
300 305parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
294 295parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
329 332anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 534first strand
Strand 2
A
541 545anti-parallel
Strand 3
A
566 569anti-parallel
Strand 4
A
572 574anti-parallel
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