Analysis of interatomic Contacts of Structural Units in PDB entry:
2QYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QYV entry

There are 2 chains in PDB entry 2QYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5ARG 486
B
 LEU 7ARG 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2QYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
29 43Right-handed alpha
Helix 3
3
A
113 129Right-handed alpha
Helix 4
4
A
149 154Right-handed alpha
Helix 5
5
A
225 241Right-handed alpha
Helix 6
6
A
273 292Right-handed alpha
Helix 7
7
A
314 328Right-handed alpha
Helix 8
8
A
369 388Right-handed alpha
Helix 9
9
A
406 421Right-handed alpha
Helix 10
10
A
434 442Right-handed alpha
Helix 11
11
A
466 483Right-handed alpha
Helix 12
12
B
9 22Right-handed alpha
Helix 13
13
B
29 43Right-handed alpha
Helix 14
14
B
113 129Right-handed alpha
Helix 15
15
B
149 154Right-handed alpha
Helix 16
16
B
225 241Right-handed alpha
Helix 17
17
B
273 293Right-handed alpha
Helix 18
18
B
314 328Right-handed alpha
Helix 19
19
B
369 387Right-handed alpha
Helix 20
20
B
406 421Right-handed alpha
Helix 21
21
B
434 442Right-handed alpha
Helix 22
22
B
466 482Right-handed alpha
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There are 12 sheets in PDB entry 2QYV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
55 59anti-parallel
Strand 3
A
137 142anti-parallel
Strand 4
A
71 76parallel
Strand 5
A
164 167parallel
Strand 6
A
446 449parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
104 107anti-parallel
Strand 3
A
463 465anti-parallel
Strand 4
A
454 455anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 180first strand
Strand 2
A
425 429parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 305first strand
Strand 2
A
201 208anti-parallel
Strand 3
A
264 270anti-parallel
Strand 4
A
246 254anti-parallel
Strand 5
A
343 354anti-parallel
Strand 6
A
331 335anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 305first strand
Strand 2
A
201 208anti-parallel
Strand 3
A
264 270anti-parallel
Strand 4
A
246 254anti-parallel
Strand 5
A
343 354anti-parallel
Strand 6
A
358 367anti-parallel
Strand 7
A
182 191anti-parallel
Strand 8
A
390 397anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
311 313anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
55 59anti-parallel
Strand 3
B
137 142anti-parallel
Strand 4
B
71 76parallel
Strand 5
B
164 167parallel
Strand 6
B
446 449parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
104 107anti-parallel
Strand 3
B
463 465anti-parallel
Strand 4
B
454 455anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 180first strand
Strand 2
B
425 429parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 305first strand
Strand 2
B
201 208anti-parallel
Strand 3
B
264 270anti-parallel
Strand 4
B
246 254anti-parallel
Strand 5
B
343 355anti-parallel
Strand 6
B
331 335anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 305first strand
Strand 2
B
201 208anti-parallel
Strand 3
B
264 270anti-parallel
Strand 4
B
246 254anti-parallel
Strand 5
B
343 355anti-parallel
Strand 6
B
358 367anti-parallel
Strand 7
B
182 191anti-parallel
Strand 8
B
390 397anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
311 313anti-parallel
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