Analysis of interatomic Contacts of Structural Units in PDB entry:
2QZ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QZ7 entry

There are 2 chains in PDB entry 2QZ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 20GLY 191
B
 GLY 20PRO 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 2QZ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 98Right-handed 310
Helix 2
2
A
119 123Right-handed 310
Helix 3
3
A
142 146Right-handed 310
Helix 4
4
A
176 184Right-handed alpha
Helix 5
5
B
96 98Right-handed 310
Helix 6
6
B
119 123Right-handed 310
Helix 7
7
B
142 146Right-handed 310
Helix 8
8
B
176 184Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2QZ7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
89 93anti-parallel
Strand 3
A
24 29anti-parallel
Strand 4
A
127 132anti-parallel
Strand 5
A
135 140anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
42 50anti-parallel
Strand 3
A
102 111anti-parallel
Strand 4
A
150 158anti-parallel
Strand 5
A
164 173anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
B
89 94anti-parallel
Strand 3
B
23 29anti-parallel
Strand 4
B
127 132anti-parallel
Strand 5
B
135 140anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
42 50anti-parallel
Strand 3
B
102 111anti-parallel
Strand 4
B
150 158anti-parallel
Strand 5
B
164 173anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il