Analysis of interatomic Contacts of Structural Units in PDB entry:
2QZE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QZE entry

There are 2 chains in PDB entry 2QZE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 13GLN 236
B
 THR 13ASP 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2QZE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 32Right-handed alpha
Helix 2
2
A
46 61Right-handed alpha
Helix 3
3
A
90 102Right-handed alpha
Helix 4
4
A
105 116Right-handed alpha
Helix 5
5
A
201 205Right-handed 310
Helix 6
6
A
220 236Right-handed alpha
Helix 7
7
B
16 32Right-handed alpha
Helix 8
8
B
46 61Right-handed alpha
Helix 9
9
B
62 64Right-handed 310
Helix 10
10
B
90 101Right-handed alpha
Helix 11
11
B
105 115Right-handed alpha
Helix 12
12
B
199 204Right-handed 310
Helix 13
13
B
220 237Right-handed alpha
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There are 2 sheets in PDB entry 2QZE. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
142 145anti-parallel
Strand 3
A
39 45anti-parallel
Strand 4
A
208 215anti-parallel
Strand 5
A
186 196anti-parallel
Strand 6
A
169 181anti-parallel
Strand 7
A
66 77anti-parallel
Strand 8
A
83 88anti-parallel
Strand 9
A
122 127anti-parallel
Strand 10
A
149 152anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 45first strand
Strand 2
B
142 152anti-parallel
Strand 3
B
122 137anti-parallel
Strand 4
B
83 88anti-parallel
Strand 5
B
66 77anti-parallel
Strand 6
B
169 181anti-parallel
Strand 7
B
186 196anti-parallel
Strand 8
B
208 215anti-parallel
Strand 9
B
39 45anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il