Analysis of interatomic Contacts of Structural Units in PDB entry:
2QZV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2QZV entry

There are 2 chains in PDB entry 2QZV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	LEU 779
B	GLY 3	LEU 779

There are 40 helices in PDB entry 2QZV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	15	Right-handed 310
Helix 2	2	A	327	337	Right-handed alpha
Helix 3	3	A	342	356	Right-handed alpha
Helix 4	4	A	406	417	Right-handed alpha
Helix 5	5	A	418	421	Right-handed 310
Helix 6	6	A	422	430	Right-handed alpha
Helix 7	7	A	494	501	Right-handed alpha
Helix 8	8	A	508	517	Right-handed alpha
Helix 9	9	A	540	544	Right-handed 310
Helix 10	10	A	553	560	Right-handed alpha
Helix 11	11	A	564	583	Right-handed alpha
Helix 12	12	A	585	596	Right-handed alpha
Helix 13	13	A	602	606	Right-handed 310
Helix 14	14	A	643	671	Right-handed alpha
Helix 15	15	A	673	687	Right-handed alpha
Helix 16	16	A	690	718	Right-handed alpha
Helix 17	17	A	735	743	Right-handed alpha
Helix 18	18	A	745	756	Right-handed alpha
Helix 19	19	A	756	768	Right-handed alpha
Helix 20	20	A	769	773	Right-handed 310
Helix 21	21	B	11	15	Right-handed 310
Helix 22	22	B	327	337	Right-handed alpha
Helix 23	23	B	342	356	Right-handed alpha
Helix 24	24	B	406	417	Right-handed alpha
Helix 25	25	B	418	421	Right-handed 310
Helix 26	26	B	422	430	Right-handed alpha
Helix 27	27	B	494	501	Right-handed alpha
Helix 28	28	B	508	517	Right-handed alpha
Helix 29	29	B	540	544	Right-handed 310
Helix 30	30	B	553	560	Right-handed alpha
Helix 31	31	B	564	583	Right-handed alpha
Helix 32	32	B	585	596	Right-handed alpha
Helix 33	33	B	602	606	Right-handed 310
Helix 34	34	B	643	671	Right-handed alpha
Helix 35	35	B	673	687	Right-handed alpha
Helix 36	36	B	690	719	Right-handed alpha
Helix 37	37	B	734	743	Right-handed alpha
Helix 38	38	B	744	755	Right-handed alpha
Helix 39	39	B	756	767	Right-handed alpha
Helix 40	40	B	768	775	Right-handed 310

There are 26 sheets in PDB entry 2QZV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	18	19	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	29	first strand
Strand 2	A	34	38	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	50	52	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	146	first strand
Strand 2	A	120	123	anti-parallel
Strand 3	A	162	163	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	179	first strand
Strand 2	A	192	198	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	249	250	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	A	241	243	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	373	first strand
Strand 2	A	376	383	anti-parallel
Strand 3	A	388	391	anti-parallel
Strand 4	A	398	401	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	467	468	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	483	first strand
Strand 2	A	486	488	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	530	first strand
Strand 2	A	535	536	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	611	612	first strand
Strand 2	A	619	620	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	630	first strand
Strand 2	A	633	637	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	18	19	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	34	38	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	50	52	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	146	first strand
Strand 2	B	120	123	anti-parallel
Strand 3	B	162	163	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	179	first strand
Strand 2	B	192	198	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	229	first strand
Strand 2	B	249	250	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	236	first strand
Strand 2	B	241	243	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	373	first strand
Strand 2	B	376	383	anti-parallel
Strand 3	B	388	391	anti-parallel
Strand 4	B	398	401	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	467	468	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	483	first strand
Strand 2	B	486	488	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	530	first strand
Strand 2	B	535	536	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	611	612	first strand
Strand 2	B	619	620	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	626	630	first strand
Strand 2	B	633	637	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2QZV

Analysis of interatomic Contacts of Structural Units in PDB entry:
2QZV