Analysis of interatomic Contacts of Structural Units in PDB entry:
2R0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2R0D entry

There are 2 chains in PDB entry 2R0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 54ALA 396
B
 GLY 54ARG 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2R0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 80Right-handed alpha
Helix 2
2
A
80 91Right-handed alpha
Helix 3
3
A
97 108Right-handed alpha
Helix 4
4
A
112 121Right-handed alpha
Helix 5
5
A
124 137Right-handed alpha
Helix 6
6
A
144 153Right-handed alpha
Helix 7
7
A
161 180Right-handed alpha
Helix 8
8
A
186 206Right-handed alpha
Helix 9
9
A
214 222Right-handed alpha
Helix 10
10
A
232 246Right-handed alpha
Helix 11
11
A
257 261Right-handed 310
Helix 12
12
A
364 381Right-handed alpha
Helix 13
13
A
382 396Right-handed alpha
Helix 14
14
B
60 80Right-handed alpha
Helix 15
15
B
80 91Right-handed alpha
Helix 16
16
B
97 108Right-handed alpha
Helix 17
17
B
112 121Right-handed alpha
Helix 18
18
B
124 137Right-handed alpha
Helix 19
19
B
144 153Right-handed alpha
Helix 20
20
B
161 180Right-handed alpha
Helix 21
21
B
186 206Right-handed alpha
Helix 22
22
B
214 222Right-handed alpha
Helix 23
23
B
232 246Right-handed alpha
Helix 24
24
B
257 261Right-handed 310
Helix 25
25
B
364 381Right-handed alpha
Helix 26
26
B
381 393Right-handed alpha
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There are 2 sheets in PDB entry 2R0D. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 318first strand
Strand 2
A
326 330anti-parallel
Strand 3
A
358 361anti-parallel
Strand 4
A
267 274anti-parallel
Strand 5
A
281 289anti-parallel
Strand 6
A
292 296anti-parallel
Strand 7
A
306 309anti-parallel
Strand 8
A
342 344anti-parallel
Strand 9
A
350 352anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 318first strand
Strand 2
B
326 330anti-parallel
Strand 3
B
358 361anti-parallel
Strand 4
B
267 274anti-parallel
Strand 5
B
281 289anti-parallel
Strand 6
B
292 296anti-parallel
Strand 7
B
306 309anti-parallel
Strand 8
B
342 344anti-parallel
Strand 9
B
350 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il