Analysis of interatomic Contacts of Structural Units in PDB entry:
2R47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2R47 entry

There are 10 chains in PDB entry 2R47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1VAL 35
A
 THR 37GLY 153
B
 GLY -1VAL 35
B
 THR 37GLY 153
C
 GLY -1VAL 35
C
 THR 37GLY 153
D
 GLY -1VAL 35
D
 THR 37GLY 153
E
 GLY -1VAL 35
E
 THR 37GLY 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 2R47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 21Right-handed alpha
Helix 2
2
A
36 47Right-handed alpha
Helix 3
3
A
59 62Right-handed 310
Helix 4
4
A
91 94Right-handed 310
Helix 5
5
A
100 111Right-handed alpha
Helix 6
6
A
125 130Right-handed alpha
Helix 7
7
A
131 136Right-handed alpha
Helix 8
8
B
9 21Right-handed alpha
Helix 9
9
B
36 47Right-handed alpha
Helix 10
10
B
59 62Right-handed 310
Helix 11
11
B
91 94Right-handed 310
Helix 12
12
B
100 111Right-handed alpha
Helix 13
13
B
125 130Right-handed alpha
Helix 14
14
B
131 136Right-handed alpha
Helix 15
15
C
8 21Right-handed alpha
Helix 16
16
C
36 47Right-handed alpha
Helix 17
17
C
59 62Right-handed 310
Helix 18
18
C
91 94Right-handed 310
Helix 19
19
C
100 111Right-handed alpha
Helix 20
20
C
125 130Right-handed alpha
Helix 21
21
C
131 136Right-handed alpha
Helix 22
22
D
9 21Right-handed alpha
Helix 23
23
D
36 47Right-handed alpha
Helix 24
24
D
59 62Right-handed 310
Helix 25
25
D
91 94Right-handed 310
Helix 26
26
D
100 111Right-handed alpha
Helix 27
27
D
125 130Right-handed alpha
Helix 28
28
D
131 136Right-handed alpha
Helix 29
29
E
9 21Right-handed alpha
Helix 30
30
E
36 47Right-handed alpha
Helix 31
31
E
59 62Right-handed 310
Helix 32
32
E
91 94Right-handed 310
Helix 33
33
E
100 111Right-handed alpha
Helix 34
34
E
125 130Right-handed alpha
Helix 35
35
E
131 136Right-handed alpha
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There are 5 sheets in PDB entry 2R47. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
B
140 152anti-parallel
Strand 3
A
140 152anti-parallel
Strand 4
B
2 8anti-parallel
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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 78first strand
Strand 2
A
64 69anti-parallel
Strand 3
A
51 56anti-parallel
Strand 4
A
26 31parallel
Strand 5
A
83 89parallel
Strand 6
A
112 123parallel
Strand 7
A
140 152parallel
Strand 8
B
140 152anti-parallel
Strand 9
B
112 123parallel
Strand 10
B
83 89parallel
Strand 11
B
26 31parallel
Strand 12
B
51 56parallel
Strand 13
B
64 69anti-parallel
Strand 14
B
72 78anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 78first strand
Strand 2
C
64 69anti-parallel
Strand 3
C
51 56anti-parallel
Strand 4
C
26 31parallel
Strand 5
C
83 89parallel
Strand 6
C
112 123parallel
Strand 7
C
140 144parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 8first strand
Strand 2
E
140 152anti-parallel
Strand 3
D
140 152anti-parallel
Strand 4
E
2 8anti-parallel
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There are 14 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 78first strand
Strand 2
D
64 69anti-parallel
Strand 3
D
51 56anti-parallel
Strand 4
D
26 31parallel
Strand 5
D
83 89parallel
Strand 6
D
112 123parallel
Strand 7
D
140 152parallel
Strand 8
E
140 152anti-parallel
Strand 9
E
112 123parallel
Strand 10
E
83 89parallel
Strand 11
E
26 31parallel
Strand 12
E
51 56parallel
Strand 13
E
64 68anti-parallel
Strand 14
E
73 78anti-parallel
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