Analysis of interatomic Contacts of Structural Units in PDB entry:
2R4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2R4J entry

There are 2 chains in PDB entry 2R4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 494
B
 MET 1LEU 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 2R4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 24Right-handed alpha
Helix 2
2
A
40 44Right-handed 310
Helix 3
3
A
52 59Right-handed 310
Helix 4
4
A
60 78Right-handed alpha
Helix 5
5
A
97 111Right-handed alpha
Helix 6
6
A
147 162Right-handed alpha
Helix 7
7
A
206 208Right-handed 310
Helix 8
8
A
209 217Right-handed alpha
Helix 9
9
A
278 282Right-handed 310
Helix 10
10
A
285 298Right-handed alpha
Helix 11
11
A
305 309Right-handed 310
Helix 12
12
A
326 330Right-handed 310
Helix 13
13
A
357 370Right-handed alpha
Helix 14
14
A
371 373Right-handed 310
Helix 15
15
A
380 384Right-handed 310
Helix 16
16
A
395 406Right-handed alpha
Helix 17
17
A
410 421Right-handed alpha
Helix 18
18
A
424 430Right-handed alpha
Helix 19
19
A
434 439Right-handed 310
Helix 20
20
A
447 458Right-handed alpha
Helix 21
21
A
462 469Right-handed alpha
Helix 22
22
A
472 476Right-handed 310
Helix 23
23
A
478 493Right-handed alpha
Helix 24
24
B
12 24Right-handed alpha
Helix 25
25
B
40 44Right-handed 310
Helix 26
26
B
52 59Right-handed 310
Helix 27
27
B
60 78Right-handed alpha
Helix 28
28
B
97 111Right-handed alpha
Helix 29
29
B
147 162Right-handed alpha
Helix 30
30
B
206 208Right-handed 310
Helix 31
31
B
209 217Right-handed alpha
Helix 32
32
B
278 282Right-handed 310
Helix 33
33
B
285 300Right-handed alpha
Helix 34
34
B
305 309Right-handed 310
Helix 35
35
B
326 330Right-handed 310
Helix 36
36
B
357 370Right-handed alpha
Helix 37
37
B
371 373Right-handed 310
Helix 38
38
B
380 384Right-handed 310
Helix 39
39
B
394 406Right-handed alpha
Helix 40
40
B
410 421Right-handed alpha
Helix 41
41
B
424 430Right-handed alpha
Helix 42
42
B
435 439Right-handed 310
Helix 43
43
B
447 458Right-handed alpha
Helix 44
44
B
462 469Right-handed alpha
Helix 45
45
B
472 476Right-handed 310
Helix 46
46
B
478 494Right-handed alpha
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There are 8 sheets in PDB entry 2R4J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
29 32parallel
Strand 3
A
3 9parallel
Strand 4
A
194 204parallel
Strand 5
A
181 188anti-parallel
Strand 6
A
170 178anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
29 32parallel
Strand 3
A
3 9parallel
Strand 4
A
194 204parallel
Strand 5
A
347 351parallel
Strand 6
A
335 339anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
137 146anti-parallel
Strand 3
A
82 90anti-parallel
Strand 4
A
245 249parallel
Strand 5
A
255 261anti-parallel
Strand 6
A
265 269anti-parallel
Strand 7
A
226 237anti-parallel
Strand 8
A
273 274anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
137 146anti-parallel
Strand 3
A
82 90anti-parallel
Strand 4
A
245 249parallel
Strand 5
A
255 261anti-parallel
Strand 6
A
265 269anti-parallel
Strand 7
A
226 237anti-parallel
Strand 8
A
311 320anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 167first strand
Strand 2
B
29 32parallel
Strand 3
B
6 9parallel
Strand 4
B
201 204parallel
Strand 5
B
344 351parallel
Strand 6
B
335 341anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
137 146anti-parallel
Strand 3
B
82 90anti-parallel
Strand 4
B
245 249parallel
Strand 5
B
255 261anti-parallel
Strand 6
B
265 269anti-parallel
Strand 7
B
226 237anti-parallel
Strand 8
B
273 274anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
137 146anti-parallel
Strand 3
B
82 90anti-parallel
Strand 4
B
245 249parallel
Strand 5
B
255 261anti-parallel
Strand 6
B
265 269anti-parallel
Strand 7
B
226 237anti-parallel
Strand 8
B
311 320anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 178first strand
Strand 2
B
181 188anti-parallel
Strand 3
B
194 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il