Analysis of interatomic Contacts of Structural Units in PDB entry:
2R4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2R4R entry

There are 3 chains in PDB entry 2R4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 37LYS 348
L
 ASP 1CYS 214
H
 GLU 1CYS 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2R4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 44Right-handed 310
Helix 2
2
A
45 50Right-handed alpha
Helix 3
3
A
51 59Right-handed alpha
Helix 4
4
A
61 65Right-handed 310
Helix 5
5
A
67 72Right-handed alpha
Helix 6
6
A
73 81Right-handed alpha
Helix 7
7
A
113 136Right-handed alpha
Helix 8
8
A
147 163Right-handed alpha
Helix 9
9
A
208 226Right-handed alpha
Helix 10
10
A
226 231Right-handed alpha
Helix 11
11
A
270 282Right-handed alpha
Helix 12
12
A
282 291Right-handed alpha
Helix 13
13
A
311 317Right-handed alpha
Helix 14
14
A
318 320Right-handed 310
Helix 15
15
A
321 326Right-handed alpha
Helix 16
16
A
331 338Right-handed alpha
Helix 17
17
L
50 52Right-handed 310
Helix 18
18
L
121 128Right-handed alpha
Helix 19
19
L
182 188Right-handed alpha
Helix 20
20
H
200 203Right-handed 310
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There are 9 sheets in PDB entry 2R4R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
73 75anti-parallel
Strand 4
L
62 64anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
12 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
12 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
116 118first strand
Strand 2
L
131 139anti-parallel
Strand 3
L
173 180anti-parallel
Strand 4
L
159 163anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
146 149first strand
Strand 2
L
193 196anti-parallel
Strand 3
L
205 207anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 5first strand
Strand 2
H
18 24anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
8 12first strand
Strand 2
H
107 111parallel
Strand 3
H
92 96anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
121 124first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
175 184anti-parallel
Strand 4
H
163 165anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
196 199first strand
Strand 2
H
204 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il