Analysis of interatomic Contacts of Structural Units in PDB entry:
2R5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2R5V entry

There are 2 chains in PDB entry 2R5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2GLY 348
B
 GLN 2GLY 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2R5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
63 72Right-handed alpha
Helix 3
3
A
84 95Right-handed alpha
Helix 4
4
A
170 183Right-handed alpha
Helix 5
5
A
225 235Right-handed alpha
Helix 6
6
A
248 259Right-handed alpha
Helix 7
7
A
267 273Right-handed alpha
Helix 8
8
A
284 292Right-handed alpha
Helix 9
9
A
331 348Right-handed alpha
Helix 10
10
B
15 28Right-handed alpha
Helix 11
11
B
62 72Right-handed alpha
Helix 12
12
B
84 95Right-handed alpha
Helix 13
13
B
170 183Right-handed alpha
Helix 14
14
B
225 235Right-handed alpha
Helix 15
15
B
248 259Right-handed alpha
Helix 16
16
B
267 278Right-handed alpha
Helix 17
17
B
284 292Right-handed alpha
Helix 18
18
B
331 348Right-handed alpha
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There are 4 sheets in PDB entry 2R5V. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 104first strand
Strand 2
A
113 117anti-parallel
Strand 3
A
123 128anti-parallel
Strand 4
A
74 82parallel
Strand 5
A
5 12anti-parallel
Strand 6
A
50 57parallel
Strand 7
A
40 47anti-parallel
Strand 8
A
30 37anti-parallel
Strand 9
A
141 142anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 194first strand
Strand 2
A
197 205anti-parallel
Strand 3
A
212 218anti-parallel
Strand 4
A
158 165parallel
Strand 5
A
238 245anti-parallel
Strand 6
A
318 324parallel
Strand 7
A
301 307anti-parallel
Strand 8
A
294 298anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 105first strand
Strand 2
B
112 117anti-parallel
Strand 3
B
123 128anti-parallel
Strand 4
B
74 82parallel
Strand 5
B
5 12anti-parallel
Strand 6
B
50 57parallel
Strand 7
B
40 47anti-parallel
Strand 8
B
30 36anti-parallel
Strand 9
B
141 142anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 194first strand
Strand 2
B
197 205anti-parallel
Strand 3
B
212 218anti-parallel
Strand 4
B
158 165parallel
Strand 5
B
238 245anti-parallel
Strand 6
B
318 324parallel
Strand 7
B
301 307anti-parallel
Strand 8
B
294 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il