Analysis of interatomic Contacts of Structural Units in PDB entry:
2R79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2R79 entry

There is 1 chain in PDB entry 2R79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 26GLY 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2R79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 44Right-handed alpha
Helix 2
2
A
46 48Right-handed 310
Helix 3
3
A
60 66Right-handed 310
Helix 4
4
A
71 75Right-handed 310
Helix 5
5
A
76 82Right-handed alpha
Helix 6
6
A
96 106Right-handed alpha
Helix 7
7
A
118 134Right-handed alpha
Helix 8
8
A
135 161Right-handed alpha
Helix 9
9
A
187 196Right-handed alpha
Helix 10
10
A
211 219Right-handed alpha
Helix 11
11
A
231 243Right-handed alpha
Helix 12
12
A
244 247Right-handed 310
Helix 13
13
A
249 254Right-handed alpha
Helix 14
14
A
262 266Right-handed 310
Helix 15
15
A
272 285Right-handed alpha
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There are 3 sheets in PDB entry 2R79. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
30 32parallel
Strand 3
A
87 90parallel
Strand 4
A
110 112parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
168 175parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
207 208anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
168 175parallel
Strand 3
A
222 227parallel
Strand 4
A
257 260parallel
Strand 5
A
300 301anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il