Analysis of interatomic Contacts of Structural Units in PDB entry:
2R8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2R8B entry

There are 2 chains in PDB entry 2R8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 43GLY 246
B
 PRO 43GLY 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2R8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
76 84Right-handed alpha
Helix 2
2
A
108 112Right-handed 310
Helix 3
3
A
114 137Right-handed alpha
Helix 4
4
A
147 160Right-handed alpha
Helix 5
5
A
201 216Right-handed alpha
Helix 6
6
A
231 243Right-handed alpha
Helix 7
7
A
244 246Right-handed 310
Helix 8
8
B
44 48Right-handed 310
Helix 9
9
B
76 82Right-handed alpha
Helix 10
10
B
114 137Right-handed alpha
Helix 11
11
B
147 160Right-handed alpha
Helix 12
12
B
201 216Right-handed alpha
Helix 13
13
B
231 242Right-handed alpha
Helix 14
14
B
243 246Right-handed 310
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There are 4 sheets in PDB entry 2R8B. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
88 92anti-parallel
Strand 3
A
62 66parallel
Strand 4
A
141 146parallel
Strand 5
A
166 170parallel
Strand 6
A
188 194parallel
Strand 7
A
218 224parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
101 103anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
88 92anti-parallel
Strand 3
B
62 66parallel
Strand 4
B
141 146parallel
Strand 5
B
166 170parallel
Strand 6
B
188 194parallel
Strand 7
B
218 224parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
101 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il