Analysis of interatomic Contacts of Structural Units in PDB entry:
2R8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2R8V entry

There is 1 chain in PDB entry 2R8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5ARG 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2R8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 22Right-handed alpha
Helix 2
2
A
32 36Right-handed 310
Helix 3
3
A
38 53Right-handed alpha
Helix 4
4
A
63 72Right-handed alpha
Helix 5
5
A
73 75Right-handed 310
Helix 6
6
A
88 112Right-handed alpha
Helix 7
7
A
154 164Right-handed alpha
Helix 8
8
A
185 198Right-handed alpha
Helix 9
9
A
224 232Right-handed alpha
Helix 10
10
A
235 251Right-handed alpha
Helix 11
11
A
265 272Right-handed alpha
Helix 12
12
A
293 295Right-handed 310
Helix 13
13
A
296 310Right-handed alpha
Helix 14
14
A
317 324Right-handed alpha
Helix 15
15
A
361 364Right-handed 310
Helix 16
16
A
367 383Right-handed alpha
Helix 17
17
A
395 401Right-handed alpha
Helix 18
18
A
408 412Right-handed 310
Helix 19
19
A
413 424Right-handed alpha
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There are 5 sheets in PDB entry 2R8V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
167 170parallel
Strand 3
A
56 61parallel
Strand 4
A
25 30parallel
Strand 5
A
201 206parallel
Strand 6
A
255 260parallel
Strand 7
A
279 282anti-parallel
Strand 8
A
221 223parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
84 85anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
147 153anti-parallel
Strand 3
A
181 184parallel
Strand 4
A
173 175anti-parallel
Strand 5
A
131 135parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
142 143anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
328 332anti-parallel
Strand 3
A
337 345anti-parallel
Strand 4
A
351 359anti-parallel
Strand 5
A
387 392parallel
Strand 6
A
428 433anti-parallel
Strand 7
A
405 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il