Analysis of interatomic Contacts of Structural Units in PDB entry:
2R8Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2R8Z entry

There are 16 chains in PDB entry 2R8Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 8	ILE 188
B	LEU 8	ILE 188
C	LEU 8	ILE 188
D	LEU 8	ILE 188
E	LEU 8	GLY 185
F	LEU 8	ILE 188
G	LEU 8	ILE 188
H	LEU 8	ILE 188
I	LEU 8	ILE 188
J	LEU 8	ILE 188
K	LEU 8	ILE 188
L	LEU 8	ILE 188
M	LEU 8	ILE 188
N	LEU 8	ILE 188
O	LEU 8	GLY 185
P	LEU 8	ILE 188

There are144 helices in PDB entry 2R8Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	16	25	Right-handed alpha
Helix 2	2	A	56	67	Right-handed alpha
Helix 3	3	A	80	91	Right-handed alpha
Helix 4	4	A	101	113	Right-handed alpha
Helix 5	5	A	116	118	Right-handed 310
Helix 6	6	A	126	128	Right-handed 310
Helix 7	7	A	129	134	Right-handed alpha
Helix 8	8	A	149	153	Right-handed 310
Helix 9	9	A	164	177	Right-handed alpha
Helix 10	10	B	16	25	Right-handed alpha
Helix 11	11	B	56	67	Right-handed alpha
Helix 12	12	B	80	91	Right-handed alpha
Helix 13	13	B	102	114	Right-handed alpha
Helix 14	14	B	116	118	Right-handed 310
Helix 15	15	B	126	128	Right-handed 310
Helix 16	16	B	129	134	Right-handed alpha
Helix 17	17	B	149	153	Right-handed 310
Helix 18	18	B	164	177	Right-handed alpha
Helix 19	19	C	16	25	Right-handed alpha
Helix 20	20	C	56	67	Right-handed alpha
Helix 21	21	C	80	91	Right-handed alpha
Helix 22	22	C	102	113	Right-handed alpha
Helix 23	23	C	116	118	Right-handed 310
Helix 24	24	C	126	128	Right-handed 310
Helix 25	25	C	129	134	Right-handed alpha
Helix 26	26	C	149	153	Right-handed 310
Helix 27	27	C	164	177	Right-handed alpha
Helix 28	28	D	16	25	Right-handed alpha
Helix 29	29	D	56	67	Right-handed alpha
Helix 30	30	D	80	91	Right-handed alpha
Helix 31	31	D	101	114	Right-handed alpha
Helix 32	32	D	116	118	Right-handed 310
Helix 33	33	D	126	128	Right-handed 310
Helix 34	34	D	129	134	Right-handed alpha
Helix 35	35	D	149	153	Right-handed 310
Helix 36	36	D	164	177	Right-handed alpha
Helix 37	37	E	16	25	Right-handed alpha
Helix 38	38	E	56	68	Right-handed alpha
Helix 39	39	E	80	91	Right-handed alpha
Helix 40	40	E	102	114	Right-handed alpha
Helix 41	41	E	116	118	Right-handed 310
Helix 42	42	E	126	128	Right-handed 310
Helix 43	43	E	129	134	Right-handed alpha
Helix 44	44	E	149	153	Right-handed 310
Helix 45	45	E	164	177	Right-handed alpha
Helix 46	46	F	16	25	Right-handed alpha
Helix 47	47	F	56	67	Right-handed alpha
Helix 48	48	F	80	91	Right-handed alpha
Helix 49	49	F	101	114	Right-handed alpha
Helix 50	50	F	116	118	Right-handed 310
Helix 51	51	F	126	128	Right-handed 310
Helix 52	52	F	129	134	Right-handed alpha
Helix 53	53	F	149	153	Right-handed 310
Helix 54	54	F	164	177	Right-handed alpha
Helix 55	55	G	16	25	Right-handed alpha
Helix 56	56	G	56	67	Right-handed alpha
Helix 57	57	G	80	91	Right-handed alpha
Helix 58	58	G	101	114	Right-handed alpha
Helix 59	59	G	116	118	Right-handed 310
Helix 60	60	G	126	128	Right-handed 310
Helix 61	61	G	129	134	Right-handed alpha
Helix 62	62	G	149	153	Right-handed 310
Helix 63	63	G	164	177	Right-handed alpha
Helix 64	64	H	16	25	Right-handed alpha
Helix 65	65	H	56	67	Right-handed alpha
Helix 66	66	H	80	91	Right-handed alpha
Helix 67	67	H	101	114	Right-handed alpha
Helix 68	68	H	116	118	Right-handed 310
Helix 69	69	H	126	128	Right-handed 310
Helix 70	70	H	129	134	Right-handed alpha
Helix 71	71	H	149	153	Right-handed 310
Helix 72	72	H	164	177	Right-handed alpha
Helix 73	73	I	16	25	Right-handed alpha
Helix 74	74	I	56	67	Right-handed alpha
Helix 75	75	I	80	91	Right-handed alpha
Helix 76	76	I	102	113	Right-handed alpha
Helix 77	77	I	116	118	Right-handed 310
Helix 78	78	I	126	128	Right-handed 310
Helix 79	79	I	129	134	Right-handed alpha
Helix 80	80	I	149	153	Right-handed 310
Helix 81	81	I	164	177	Right-handed alpha
Helix 82	82	J	16	25	Right-handed alpha
Helix 83	83	J	56	67	Right-handed alpha
Helix 84	84	J	80	91	Right-handed alpha
Helix 85	85	J	101	113	Right-handed alpha
Helix 86	86	J	116	118	Right-handed 310
Helix 87	87	J	126	128	Right-handed 310
Helix 88	88	J	129	134	Right-handed alpha
Helix 89	89	J	149	153	Right-handed 310
Helix 90	90	J	164	177	Right-handed alpha
Helix 91	91	K	16	25	Right-handed alpha
Helix 92	92	K	56	67	Right-handed alpha
Helix 93	93	K	80	91	Right-handed alpha
Helix 94	94	K	102	114	Right-handed alpha
Helix 95	95	K	116	118	Right-handed 310
Helix 96	96	K	126	128	Right-handed 310
Helix 97	97	K	129	134	Right-handed alpha
Helix 98	98	K	149	153	Right-handed 310
Helix 99	99	K	164	177	Right-handed alpha
Helix 100	100	L	16	25	Right-handed alpha
Helix 101	101	L	56	67	Right-handed alpha
Helix 102	102	L	80	91	Right-handed alpha
Helix 103	103	L	101	114	Right-handed alpha
Helix 104	104	L	116	118	Right-handed 310
Helix 105	105	L	126	128	Right-handed 310
Helix 106	106	L	129	136	Right-handed alpha
Helix 107	107	L	149	153	Right-handed 310
Helix 108	108	L	164	177	Right-handed alpha
Helix 109	109	M	16	24	Right-handed alpha
Helix 110	110	M	56	67	Right-handed alpha
Helix 111	111	M	80	91	Right-handed alpha
Helix 112	112	M	101	114	Right-handed alpha
Helix 113	113	M	116	118	Right-handed 310
Helix 114	114	M	126	128	Right-handed 310
Helix 115	115	M	129	134	Right-handed alpha
Helix 116	116	M	149	153	Right-handed 310
Helix 117	117	M	164	177	Right-handed alpha
Helix 118	118	N	16	25	Right-handed alpha
Helix 119	119	N	55	67	Right-handed alpha
Helix 120	120	N	80	91	Right-handed alpha
Helix 121	121	N	101	114	Right-handed alpha
Helix 122	122	N	116	118	Right-handed 310
Helix 123	123	N	126	128	Right-handed 310
Helix 124	124	N	129	134	Right-handed alpha
Helix 125	125	N	149	153	Right-handed 310
Helix 126	126	N	164	177	Right-handed alpha
Helix 127	127	O	16	25	Right-handed alpha
Helix 128	128	O	56	67	Right-handed alpha
Helix 129	129	O	80	91	Right-handed alpha
Helix 130	130	O	101	114	Right-handed alpha
Helix 131	131	O	116	118	Right-handed 310
Helix 132	132	O	126	128	Right-handed 310
Helix 133	133	O	129	134	Right-handed alpha
Helix 134	134	O	149	153	Right-handed 310
Helix 135	135	O	164	177	Right-handed alpha
Helix 136	136	P	16	25	Right-handed alpha
Helix 137	137	P	55	68	Right-handed alpha
Helix 138	138	P	80	91	Right-handed alpha
Helix 139	139	P	102	114	Right-handed alpha
Helix 140	140	P	116	118	Right-handed 310
Helix 141	141	P	126	128	Right-handed 310
Helix 142	142	P	129	134	Right-handed alpha
Helix 143	143	P	149	153	Right-handed 310
Helix 144	144	P	164	177	Right-handed alpha

There are 23 sheets in PDB entry 2R8Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	71	75	parallel
Strand 3	A	28	31	parallel
Strand 4	A	120	124	parallel
Strand 5	A	138	141	parallel
Strand 6	A	155	156	parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	45	first strand
Strand 2	A	50	55	anti-parallel
Strand 3	B	41	45	anti-parallel
Strand 4	B	50	55	anti-parallel
Strand 5	C	41	45	anti-parallel
Strand 6	C	50	55	anti-parallel
Strand 7	D	41	45	anti-parallel
Strand 8	D	50	55	anti-parallel
Strand 9	A	41	45	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	71	75	parallel
Strand 3	B	28	31	parallel
Strand 4	B	120	124	parallel
Strand 5	B	138	141	parallel
Strand 6	B	155	156	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	71	75	parallel
Strand 3	C	28	31	parallel
Strand 4	C	120	124	parallel
Strand 5	C	138	141	parallel
Strand 6	C	155	156	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	71	75	parallel
Strand 3	D	28	31	parallel
Strand 4	D	120	124	parallel
Strand 5	D	138	141	parallel
Strand 6	D	155	156	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	96	first strand
Strand 2	E	71	75	parallel
Strand 3	E	28	31	parallel
Strand 4	E	120	124	parallel
Strand 5	E	138	141	parallel
Strand 6	E	155	156	parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	45	first strand
Strand 2	E	50	55	anti-parallel
Strand 3	F	41	45	anti-parallel
Strand 4	F	50	55	anti-parallel
Strand 5	G	41	45	anti-parallel
Strand 6	G	50	55	anti-parallel
Strand 7	H	41	45	anti-parallel
Strand 8	H	50	55	anti-parallel
Strand 9	E	41	45	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	96	first strand
Strand 2	F	71	75	parallel
Strand 3	F	28	31	parallel
Strand 4	F	120	124	parallel
Strand 5	F	138	141	parallel
Strand 6	F	155	156	parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	96	first strand
Strand 2	G	71	75	parallel
Strand 3	G	28	31	parallel
Strand 4	G	120	124	parallel
Strand 5	G	138	141	parallel
Strand 6	G	155	156	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	94	96	first strand
Strand 2	H	71	75	parallel
Strand 3	H	28	31	parallel
Strand 4	H	120	124	parallel
Strand 5	H	138	141	parallel
Strand 6	H	155	156	parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	94	96	first strand
Strand 2	I	71	75	parallel
Strand 3	I	28	31	parallel
Strand 4	I	120	124	parallel
Strand 5	I	138	141	parallel
Strand 6	I	155	156	parallel

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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	41	45	first strand
Strand 2	I	50	55	anti-parallel
Strand 3	J	41	45	anti-parallel
Strand 4	J	50	55	anti-parallel
Strand 5	K	41	45	anti-parallel
Strand 6	K	50	55	anti-parallel
Strand 7	L	41	45	anti-parallel
Strand 8	L	50	55	anti-parallel
Strand 9	I	41	45	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	94	96	first strand
Strand 2	J	71	75	parallel
Strand 3	J	28	31	parallel
Strand 4	J	120	124	parallel
Strand 5	J	138	141	parallel
Strand 6	J	155	156	parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	94	96	first strand
Strand 2	K	71	75	parallel
Strand 3	K	28	31	parallel
Strand 4	K	120	124	parallel
Strand 5	K	138	141	parallel
Strand 6	K	155	156	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	10	first strand
Strand 2	L	13	14	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	94	96	first strand
Strand 2	L	71	75	parallel
Strand 3	L	28	31	parallel
Strand 4	L	120	124	parallel
Strand 5	L	138	141	parallel
Strand 6	L	155	156	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	10	first strand
Strand 2	M	13	14	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	94	96	first strand
Strand 2	M	71	75	parallel
Strand 3	M	28	31	parallel
Strand 4	M	120	124	parallel
Strand 5	M	138	141	parallel
Strand 6	M	155	156	parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	43	44	first strand
Strand 2	M	50	55	anti-parallel
Strand 3	N	41	45	anti-parallel
Strand 4	N	50	51	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	94	96	first strand
Strand 2	N	71	75	parallel
Strand 3	N	28	31	parallel
Strand 4	N	120	124	parallel
Strand 5	N	138	141	parallel
Strand 6	N	155	156	parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	94	96	first strand
Strand 2	O	71	75	parallel
Strand 3	O	28	31	parallel
Strand 4	O	120	124	parallel
Strand 5	O	138	141	parallel
Strand 6	O	155	156	parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	43	44	first strand
Strand 2	O	50	55	anti-parallel
Strand 3	P	41	45	anti-parallel
Strand 4	P	50	51	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	94	96	first strand
Strand 2	P	71	75	parallel
Strand 3	P	28	31	parallel
Strand 4	P	120	124	parallel
Strand 5	P	138	141	parallel
Strand 6	P	155	156	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2R8Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
2R8Z