Analysis of interatomic Contacts of Structural Units in PDB entry:
2RAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RAD entry

There are 2 chains in PDB entry 2RAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 40HIS 442
B
 ASN 38HIS 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 2RAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 49Right-handed alpha
Helix 2
2
A
62 66Right-handed 310
Helix 3
3
A
67 73Right-handed alpha
Helix 4
4
A
87 104Right-handed alpha
Helix 5
5
A
116 129Right-handed alpha
Helix 6
6
A
132 137Right-handed alpha
Helix 7
7
A
138 142Right-handed 310
Helix 8
8
A
143 159Right-handed alpha
Helix 9
9
A
177 191Right-handed alpha
Helix 10
10
A
195 207Right-handed alpha
Helix 11
11
A
208 210Right-handed 310
Helix 12
12
A
212 218Right-handed alpha
Helix 13
13
A
225 241Right-handed alpha
Helix 14
14
A
242 245Right-handed 310
Helix 15
15
A
249 269Right-handed alpha
Helix 16
16
A
275 299Right-handed alpha
Helix 17
17
A
307 311Right-handed alpha
Helix 18
18
A
323 333Right-handed alpha
Helix 19
19
A
370 375Right-handed alpha
Helix 20
20
A
388 390Right-handed 310
Helix 21
21
A
392 398Right-handed alpha
Helix 22
22
A
422 427Right-handed alpha
Helix 23
23
B
44 49Right-handed alpha
Helix 24
24
B
67 73Right-handed alpha
Helix 25
25
B
87 105Right-handed alpha
Helix 26
26
B
116 129Right-handed alpha
Helix 27
27
B
132 136Right-handed 310
Helix 28
28
B
138 142Right-handed 310
Helix 29
29
B
143 159Right-handed alpha
Helix 30
30
B
177 190Right-handed alpha
Helix 31
31
B
191 195Right-handed 310
Helix 32
32
B
196 210Right-handed alpha
Helix 33
33
B
212 218Right-handed alpha
Helix 34
34
B
227 241Right-handed alpha
Helix 35
35
B
242 246Right-handed 310
Helix 36
36
B
251 271Right-handed alpha
Helix 37
37
B
276 299Right-handed alpha
Helix 38
38
B
308 310Right-handed 310
Helix 39
39
B
323 333Right-handed alpha
Helix 40
40
B
370 378Right-handed alpha
Helix 41
41
B
388 390Right-handed 310
Helix 42
42
B
392 399Right-handed alpha
Helix 43
43
B
422 427Right-handed alpha
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There are 6 sheets in PDB entry 2RAD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
382 386anti-parallel
Strand 3
A
429 436anti-parallel
Strand 4
A
336 346parallel
Strand 5
A
77 82parallel
Strand 6
A
301 306parallel
Strand 7
A
109 115parallel
Strand 8
A
167 172parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 351first strand
Strand 2
A
357 358anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 405first strand
Strand 2
A
418 421anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
382 386anti-parallel
Strand 3
B
429 436anti-parallel
Strand 4
B
336 346parallel
Strand 5
B
77 82parallel
Strand 6
B
301 306parallel
Strand 7
B
109 115parallel
Strand 8
B
167 172parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 351first strand
Strand 2
B
357 358anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 405first strand
Strand 2
B
418 421anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il