Analysis of interatomic Contacts of Structural Units in PDB entry:
2RB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RB7 entry

There are 2 chains in PDB entry 2RB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 359
B
 GLY 0GLU 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2RB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 16Right-handed alpha
Helix 2
2
A
23 41Right-handed alpha
Helix 3
3
A
79 84Right-handed 310
Helix 4
4
A
100 121Right-handed alpha
Helix 5
5
A
124 128Right-handed 310
Helix 6
6
A
137 141Right-handed 310
Helix 7
7
A
145 150Right-handed alpha
Helix 8
8
A
151 153Right-handed 310
Helix 9
9
A
192 196Right-handed 310
Helix 10
10
A
198 212Right-handed alpha
Helix 11
11
A
257 269Right-handed alpha
Helix 12
12
A
287 298Right-handed alpha
Helix 13
13
A
308 317Right-handed 310
Helix 14
14
A
341 359Right-handed alpha
Helix 15
15
B
2 16Right-handed alpha
Helix 16
16
B
23 41Right-handed alpha
Helix 17
17
B
79 84Right-handed 310
Helix 18
18
B
100 121Right-handed alpha
Helix 19
19
B
124 128Right-handed 310
Helix 20
20
B
137 141Right-handed 310
Helix 21
21
B
145 150Right-handed alpha
Helix 22
22
B
151 153Right-handed 310
Helix 23
23
B
192 196Right-handed 310
Helix 24
24
B
198 212Right-handed alpha
Helix 25
25
B
257 269Right-handed alpha
Helix 26
26
B
287 298Right-handed alpha
Helix 27
27
B
308 317Right-handed 310
Helix 28
28
B
341 358Right-handed alpha
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There are 9 sheets in PDB entry 2RB7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
130 135anti-parallel
Strand 4
A
64 72parallel
Strand 5
A
154 160parallel
Strand 6
A
320 322parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
91 93anti-parallel
Strand 3
A
337 339anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
300 304parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 279first strand
Strand 2
A
175 184anti-parallel
Strand 3
A
243 252anti-parallel
Strand 4
A
225 233anti-parallel
Strand 5
B
225 233anti-parallel
Strand 6
B
243 252anti-parallel
Strand 7
B
175 184anti-parallel
Strand 8
B
272 279anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
239 240anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
53 58anti-parallel
Strand 3
B
130 135anti-parallel
Strand 4
B
64 72parallel
Strand 5
B
154 161parallel
Strand 6
B
320 323parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
91 93anti-parallel
Strand 3
B
337 339anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 283first strand
Strand 2
B
168 173anti-parallel
Strand 3
B
300 304parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
239 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il