Analysis of interatomic Contacts of Structural Units in PDB entry:
2RD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RD5 entry

There are 4 chains in PDB entry 2RD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 17GLY 297
B
 SER 15GLY 297
C
 ASP 5ASP 129
D
 ASP 5MET 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 2RD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 26Right-handed alpha
Helix 2
2
A
26 33Right-handed alpha
Helix 3
3
A
44 49Right-handed alpha
Helix 4
4
A
49 66Right-handed alpha
Helix 5
5
A
76 87Right-handed alpha
Helix 6
6
A
101 115Right-handed alpha
Helix 7
7
A
115 127Right-handed alpha
Helix 8
8
A
137 140Right-handed 310
Helix 9
9
A
149 154Right-handed alpha
Helix 10
10
A
166 173Right-handed alpha
Helix 11
11
A
194 207Right-handed alpha
Helix 12
12
A
236 245Right-handed alpha
Helix 13
13
A
251 265Right-handed alpha
Helix 14
14
A
279 287Right-handed alpha
Helix 15
15
B
15 25Right-handed alpha
Helix 16
16
B
26 33Right-handed alpha
Helix 17
17
B
44 47Right-handed 310
Helix 18
18
B
49 66Right-handed alpha
Helix 19
19
B
76 88Right-handed alpha
Helix 20
20
B
101 115Right-handed alpha
Helix 21
21
B
115 126Right-handed alpha
Helix 22
22
B
137 140Right-handed 310
Helix 23
23
B
149 154Right-handed alpha
Helix 24
24
B
166 173Right-handed alpha
Helix 25
25
B
194 206Right-handed alpha
Helix 26
26
B
236 245Right-handed alpha
Helix 27
27
B
251 265Right-handed alpha
Helix 28
28
B
279 286Right-handed alpha
Helix 29
29
C
23 34Right-handed alpha
Helix 30
30
C
81 94Right-handed alpha
Helix 31
31
C
120 125Right-handed alpha
Helix 32
32
D
20 22Right-handed 310
Helix 33
33
D
23 34Right-handed alpha
Helix 34
34
D
81 94Right-handed alpha
Helix 35
35
D
119 125Right-handed alpha
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There are 12 sheets in PDB entry 2RD5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
176 180parallel
Strand 3
A
69 74parallel
Strand 4
A
37 42parallel
Strand 5
A
210 215parallel
Strand 6
A
269 274parallel
Strand 7
A
292 296anti-parallel
Strand 8
A
233 235parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
97 98anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
156 162anti-parallel
Strand 3
A
190 193parallel
Strand 4
A
182 184anti-parallel
Strand 5
A
142 146parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
230 231anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
176 179parallel
Strand 3
B
69 74parallel
Strand 4
B
37 42parallel
Strand 5
B
210 215parallel
Strand 6
B
269 274parallel
Strand 7
B
292 296anti-parallel
Strand 8
B
233 235parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
97 98anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 146first strand
Strand 2
B
157 162anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
190 192anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 46first strand
Strand 2
C
68 78anti-parallel
Strand 3
C
12 19anti-parallel
Strand 4
C
101 108anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 57first strand
Strand 2
C
60 62anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 46first strand
Strand 2
D
68 78anti-parallel
Strand 3
D
12 19anti-parallel
Strand 4
D
102 108anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 57first strand
Strand 2
D
60 62anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il