Analysis of interatomic Contacts of Structural Units in PDB entry:
2RD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RD7 entry

There are 2 chains in PDB entry 2RD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 109MET 462
C
 THR 15VAL 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2RD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
118 123Right-handed alpha
Helix 2
2
A
202 214Right-handed alpha
Helix 3
3
A
242 251Right-handed alpha
Helix 4
4
A
281 290Right-handed alpha
Helix 5
5
A
296 308Right-handed alpha
Helix 6
6
A
329 336Right-handed alpha
Helix 7
7
A
338 350Right-handed alpha
Helix 8
8
A
367 373Right-handed alpha
Helix 9
9
A
377 384Right-handed alpha
Helix 10
10
A
412 420Right-handed alpha
Helix 11
11
A
435 441Right-handed 310
Helix 12
12
A
446 462Right-handed alpha
Helix 13
13
C
40 45Right-handed alpha
Helix 14
14
C
138 152Right-handed alpha
Helix 15
15
C
155 157Right-handed 310
Helix 16
16
C
172 174Right-handed 310
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There are 7 sheets in PDB entry 2RD7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
124 127anti-parallel
Strand 3
A
310 328anti-parallel
Strand 4
A
425 433anti-parallel
Strand 5
A
230 235anti-parallel
Strand 6
A
218 222anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 187first strand
Strand 2
A
257 273anti-parallel
Strand 3
A
310 328anti-parallel
Strand 4
A
386 391anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 200first strand
Strand 2
A
257 273anti-parallel
Strand 3
A
310 328anti-parallel
Strand 4
A
386 391anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
174 177anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
166 169anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 94first strand
Strand 2
C
103 110anti-parallel
Strand 3
C
115 121anti-parallel
Strand 4
C
127 132anti-parallel
Strand 5
C
29 38anti-parallel
Strand 6
C
159 161anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 94first strand
Strand 2
C
103 110anti-parallel
Strand 3
C
115 121anti-parallel
Strand 4
C
127 132anti-parallel
Strand 5
C
29 38anti-parallel
Strand 6
C
54 58anti-parallel
Strand 7
C
65 72anti-parallel
Strand 8
C
75 82anti-parallel
Strand 9
C
176 178parallel
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