Analysis of interatomic Contacts of Structural Units in PDB entry:
2RDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RDG entry

There is 1 chain in PDB entry 2RDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5LEU 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2RDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 18Right-handed alpha
Helix 2
2
A
52 57Right-handed alpha
Helix 3
3
A
77 81Right-handed 310
Helix 4
4
A
130 145Right-handed alpha
Helix 5
5
A
176 180Right-handed 310
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There are 3 sheets in PDB entry 2RDG. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
43 48parallel
Strand 3
A
35 40anti-parallel
Strand 4
A
21 32anti-parallel
Strand 5
A
60 70anti-parallel
Strand 6
A
86 88anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 123first strand
Strand 2
A
99 108anti-parallel
Strand 3
A
189 195parallel
Strand 4
A
156 161anti-parallel
Strand 5
A
166 170anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
183 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il