Analysis of interatomic Contacts of Structural Units in PDB entry:
2RDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RDZ entry

There are 4 chains in PDB entry 2RDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 37SER 477
B
 THR 37SER 477
C
 THR 37SER 477
D
 THR 37SER 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are113 helices in PDB entry 2RDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 46Right-handed 310
Helix 2
2
A
49 58Right-handed alpha
Helix 3
3
A
59 62Right-handed 310
Helix 4
4
A
67 72Right-handed alpha
Helix 5
5
A
73 79Right-handed alpha
Helix 6
6
A
82 86Right-handed 310
Helix 7
7
A
93 95Right-handed 310
Helix 8
8
A
96 104Right-handed alpha
Helix 9
9
A
105 108Right-handed 310
Helix 10
10
A
119 124Right-handed 310
Helix 11
11
A
128 138Right-handed alpha
Helix 12
12
A
138 144Right-handed alpha
Helix 13
13
A
146 151Right-handed 310
Helix 14
14
A
159 164Right-handed alpha
Helix 15
15
A
168 173Right-handed alpha
Helix 16
16
A
182 192Right-handed alpha
Helix 17
17
A
195 199Right-handed 310
Helix 18
18
A
200 210Right-handed alpha
Helix 19
19
A
234 245Right-handed alpha
Helix 20
20
A
265 273Right-handed alpha
Helix 21
21
A
273 278Right-handed alpha
Helix 22
22
A
281 287Right-handed alpha
Helix 23
23
A
305 317Right-handed 310
Helix 24
24
A
321 360Right-handed alpha
Helix 25
25
A
363 386Right-handed alpha
Helix 26
26
A
389 394Right-handed alpha
Helix 27
27
A
394 423Right-handed alpha
Helix 28
28
A
436 444Right-handed alpha
Helix 29
29
A
447 473Right-handed alpha
Helix 30
30
B
41 46Right-handed 310
Helix 31
31
B
49 58Right-handed alpha
Helix 32
32
B
59 62Right-handed 310
Helix 33
33
B
67 72Right-handed alpha
Helix 34
34
B
73 79Right-handed alpha
Helix 35
35
B
82 86Right-handed 310
Helix 36
36
B
93 95Right-handed 310
Helix 37
37
B
96 104Right-handed alpha
Helix 38
38
B
105 108Right-handed 310
Helix 39
39
B
119 124Right-handed 310
Helix 40
40
B
128 144Right-handed alpha
Helix 41
41
B
146 151Right-handed 310
Helix 42
42
B
159 164Right-handed alpha
Helix 43
43
B
168 173Right-handed alpha
Helix 44
44
B
182 192Right-handed alpha
Helix 45
45
B
195 199Right-handed 310
Helix 46
46
B
200 210Right-handed alpha
Helix 47
47
B
234 245Right-handed alpha
Helix 48
48
B
265 273Right-handed alpha
Helix 49
49
B
273 278Right-handed alpha
Helix 50
50
B
281 287Right-handed alpha
Helix 51
51
B
305 317Right-handed 310
Helix 52
52
B
321 360Right-handed alpha
Helix 53
53
B
363 386Right-handed alpha
Helix 54
54
B
389 394Right-handed alpha
Helix 55
55
B
394 423Right-handed alpha
Helix 56
56
B
436 444Right-handed alpha
Helix 57
57
B
447 473Right-handed alpha
Helix 58
58
C
41 46Right-handed 310
Helix 59
59
C
49 58Right-handed alpha
Helix 60
60
C
59 62Right-handed 310
Helix 61
61
C
67 72Right-handed alpha
Helix 62
62
C
73 79Right-handed alpha
Helix 63
63
C
82 86Right-handed 310
Helix 64
64
C
93 95Right-handed 310
Helix 65
65
C
96 104Right-handed alpha
Helix 66
66
C
105 108Right-handed 310
Helix 67
67
C
119 124Right-handed 310
Helix 68
68
C
128 144Right-handed alpha
Helix 69
69
C
146 151Right-handed alpha
Helix 70
70
C
159 164Right-handed alpha
Helix 71
71
C
168 173Right-handed alpha
Helix 72
72
C
182 192Right-handed alpha
Helix 73
73
C
195 199Right-handed 310
Helix 74
74
C
200 210Right-handed alpha
Helix 75
75
C
234 245Right-handed alpha
Helix 76
76
C
265 273Right-handed alpha
Helix 77
77
C
273 278Right-handed alpha
Helix 78
78
C
281 287Right-handed alpha
Helix 79
79
C
305 317Right-handed 310
Helix 80
80
C
321 360Right-handed alpha
Helix 81
81
C
363 386Right-handed alpha
Helix 82
82
C
389 394Right-handed alpha
Helix 83
83
C
394 423Right-handed alpha
Helix 84
84
C
436 444Right-handed alpha
Helix 85
85
C
447 473Right-handed alpha
Helix 86
86
D
41 46Right-handed 310
Helix 87
87
D
49 58Right-handed alpha
Helix 88
88
D
59 62Right-handed 310
Helix 89
89
D
67 72Right-handed alpha
Helix 90
90
D
73 79Right-handed alpha
Helix 91
91
D
82 86Right-handed 310
Helix 92
92
D
93 95Right-handed 310
Helix 93
93
D
96 104Right-handed alpha
Helix 94
94
D
105 108Right-handed 310
Helix 95
95
D
119 124Right-handed 310
Helix 96
96
D
128 144Right-handed alpha
Helix 97
97
D
146 151Right-handed alpha
Helix 98
98
D
159 164Right-handed alpha
Helix 99
99
D
168 173Right-handed alpha
Helix 100
100
D
182 192Right-handed alpha
Helix 101
101
D
195 199Right-handed 310
Helix 102
102
D
200 210Right-handed alpha
Helix 103
103
D
234 245Right-handed alpha
Helix 104
104
D
265 273Right-handed alpha
Helix 105
105
D
273 278Right-handed alpha
Helix 106
106
D
281 287Right-handed alpha
Helix 107
107
D
305 317Right-handed 310
Helix 108
108
D
321 360Right-handed alpha
Helix 109
109
D
363 386Right-handed alpha
Helix 110
110
D
389 394Right-handed alpha
Helix 111
111
D
394 423Right-handed alpha
Helix 112
112
D
436 444Right-handed alpha
Helix 113
113
D
447 473Right-handed alpha
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There are 12 sheets in PDB entry 2RDZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
224 226anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
258 259anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
297 299anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 219first strand
Strand 2
B
224 226anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 251first strand
Strand 2
B
258 259anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
297 299anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 219first strand
Strand 2
C
224 226anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 251first strand
Strand 2
C
258 259anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 291first strand
Strand 2
C
297 299anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
217 219first strand
Strand 2
D
224 226anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
250 251first strand
Strand 2
D
258 259anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
289 291first strand
Strand 2
D
297 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il