Analysis of interatomic Contacts of Structural Units in PDB entry:
2RF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RF9 entry

There are 4 chains in PDB entry 2RF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 675GLY 959
B
 GLN 677GLU 961
C
 LYS 336LYS 362
D
 SER 337LYS 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 2RF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
731 743Right-handed alpha
Helix 2
2
A
773 781Right-handed alpha
Helix 3
3
A
782 785Right-handed 310
Helix 4
4
A
786 806Right-handed alpha
Helix 5
5
A
853 857Right-handed 310
Helix 6
6
A
858 863Right-handed alpha
Helix 7
7
A
868 885Right-handed alpha
Helix 8
8
A
897 904Right-handed alpha
Helix 9
9
A
919 927Right-handed alpha
Helix 10
10
A
930 934Right-handed 310
Helix 11
11
A
936 948Right-handed alpha
Helix 12
12
A
950 955Right-handed alpha
Helix 13
13
B
732 744Right-handed alpha
Helix 14
14
B
773 781Right-handed alpha
Helix 15
15
B
786 806Right-handed alpha
Helix 16
16
B
858 863Right-handed alpha
Helix 17
17
B
868 885Right-handed alpha
Helix 18
18
B
898 904Right-handed alpha
Helix 19
19
B
916 927Right-handed alpha
Helix 20
20
B
936 950Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 2RF9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 683first strand
Strand 2
A
753 758parallel
Strand 3
A
762 766anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 697first strand
Strand 2
A
700 707anti-parallel
Strand 3
A
716 717anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 823first strand
Strand 2
A
826 829anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
845 846first strand
Strand 2
A
866 867anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
907 908first strand
Strand 2
C
350 351anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
689 695first strand
Strand 2
B
700 707anti-parallel
Strand 3
B
716 723anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
756 757first strand
Strand 2
B
763 764anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
809 810first strand
Strand 2
B
836 837anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
819 823first strand
Strand 2
B
826 829anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
907 908first strand
Strand 2
D
350 351anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il