Analysis of interatomic Contacts of Structural Units in PDB entry:
2RFZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2RFZ entry

There are 4 chains in PDB entry 2RFZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	PHE 430
B	ARG 2	PHE 430
C	ARG 2	PHE 430
D	ARG 2	PHE 430

There are 37 helices in PDB entry 2RFZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	163	168	Right-handed 310
Helix 2	2	A	241	243	Right-handed 310
Helix 3	3	A	325	332	Right-handed alpha
Helix 4	4	A	340	345	Right-handed alpha
Helix 5	5	A	346	353	Right-handed alpha
Helix 6	6	A	373	378	Right-handed alpha
Helix 7	7	A	401	409	Right-handed alpha
Helix 8	8	B	36	39	Right-handed 310
Helix 9	9	B	63	69	Right-handed alpha
Helix 10	10	B	76	82	Right-handed alpha
Helix 11	11	B	164	168	Right-handed 310
Helix 12	12	B	241	243	Right-handed 310
Helix 13	13	B	325	336	Right-handed alpha
Helix 14	14	B	340	345	Right-handed alpha
Helix 15	15	B	346	355	Right-handed alpha
Helix 16	16	B	373	378	Right-handed alpha
Helix 17	17	B	401	409	Right-handed alpha
Helix 18	18	C	36	39	Right-handed 310
Helix 19	19	C	63	69	Right-handed alpha
Helix 20	20	C	76	82	Right-handed alpha
Helix 21	21	C	164	168	Right-handed 310
Helix 22	22	C	241	243	Right-handed 310
Helix 23	23	C	325	336	Right-handed alpha
Helix 24	24	C	340	345	Right-handed alpha
Helix 25	25	C	346	356	Right-handed alpha
Helix 26	26	C	373	378	Right-handed alpha
Helix 27	27	C	381	385	Right-handed 310
Helix 28	28	C	401	409	Right-handed alpha
Helix 29	29	D	36	39	Right-handed 310
Helix 30	30	D	76	82	Right-handed alpha
Helix 31	31	D	164	168	Right-handed 310
Helix 32	32	D	241	243	Right-handed 310
Helix 33	33	D	325	337	Right-handed alpha
Helix 34	34	D	340	345	Right-handed alpha
Helix 35	35	D	346	355	Right-handed alpha
Helix 36	36	D	373	378	Right-handed alpha
Helix 37	37	D	401	409	Right-handed alpha

There are 40 sheets in PDB entry 2RFZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	70	72	parallel
Strand 3	A	41	42	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	16	18	anti-parallel
Strand 3	A	413	423	parallel
Strand 4	A	89	93	anti-parallel
Strand 5	A	84	86	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	16	18	anti-parallel
Strand 3	A	413	423	parallel
Strand 4	A	125	131	anti-parallel
Strand 5	A	286	291	anti-parallel
Strand 6	A	299	303	anti-parallel
Strand 7	A	306	308	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	106	112	anti-parallel
Strand 3	A	116	117	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	106	112	anti-parallel
Strand 3	A	361	366	anti-parallel
Strand 4	A	141	147	anti-parallel
Strand 5	A	212	218	anti-parallel
Strand 6	A	223	228	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	54	55	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	186	187	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	202	203	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	209	first strand
Strand 2	A	236	239	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	280	281	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	70	71	parallel
Strand 3	B	41	42	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	89	93	anti-parallel
Strand 3	B	413	423	anti-parallel
Strand 4	B	125	132	anti-parallel
Strand 5	B	286	293	anti-parallel
Strand 6	B	296	303	anti-parallel
Strand 7	B	306	308	anti-parallel

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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	308	first strand
Strand 2	B	296	303	anti-parallel
Strand 3	B	286	293	anti-parallel
Strand 4	B	125	132	anti-parallel
Strand 5	B	413	423	anti-parallel
Strand 6	B	13	21	parallel
Strand 7	B	28	34	anti-parallel
Strand 8	B	106	112	anti-parallel
Strand 9	B	116	117	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	B	13	21	anti-parallel
Strand 3	B	28	34	anti-parallel
Strand 4	B	106	112	anti-parallel
Strand 5	B	359	365	anti-parallel
Strand 6	B	119	120	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	120	first strand
Strand 2	B	359	365	anti-parallel
Strand 3	B	144	147	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	103	104	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	186	187	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	202	203	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	209	first strand
Strand 2	B	236	239	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	218	first strand
Strand 2	B	223	228	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	280	281	parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	70	71	parallel
Strand 3	C	41	43	anti-parallel
Strand 4	C	47	48	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	29	first strand
Strand 2	C	15	21	anti-parallel
Strand 3	C	413	423	parallel
Strand 4	C	89	93	anti-parallel
Strand 5	C	83	86	anti-parallel

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There are 7 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	29	first strand
Strand 2	C	15	21	anti-parallel
Strand 3	C	413	423	parallel
Strand 4	C	125	132	anti-parallel
Strand 5	C	286	293	anti-parallel
Strand 6	C	296	303	anti-parallel
Strand 7	C	306	309	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	359	366	anti-parallel
Strand 4	C	119	120	anti-parallel

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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	359	366	anti-parallel
Strand 4	C	141	147	anti-parallel
Strand 5	C	212	219	anti-parallel
Strand 6	C	222	228	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	54	55	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	183	first strand
Strand 2	C	186	187	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	194	first strand
Strand 2	C	202	203	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	209	first strand
Strand 2	C	236	239	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	275	first strand
Strand 2	C	280	281	parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	D	70	71	parallel
Strand 3	D	41	42	anti-parallel

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There are 10 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	89	93	anti-parallel
Strand 3	D	413	423	anti-parallel
Strand 4	D	13	19	parallel
Strand 5	D	25	34	anti-parallel
Strand 6	D	106	110	anti-parallel
Strand 7	D	359	367	anti-parallel
Strand 8	D	140	147	anti-parallel
Strand 9	D	212	219	anti-parallel
Strand 10	D	222	228	anti-parallel

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There are 9 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	120	first strand
Strand 2	D	359	367	anti-parallel
Strand 3	D	106	110	anti-parallel
Strand 4	D	25	34	anti-parallel
Strand 5	D	13	19	anti-parallel
Strand 6	D	413	423	parallel
Strand 7	D	125	132	anti-parallel
Strand 8	D	286	293	anti-parallel
Strand 9	D	296	302	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	54	55	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	101	104	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	183	first strand
Strand 2	D	186	187	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	194	first strand
Strand 2	D	202	203	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	209	first strand
Strand 2	D	236	239	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	275	first strand
Strand 2	D	280	281	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2RFZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
2RFZ