Analysis of interatomic Contacts of Structural Units in PDB entry:
2RGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RGO entry

There are 2 chains in PDB entry 2RGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 605
B
 MET 1LYS 607
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 2RGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 17Right-handed alpha
Helix 2
2
A
27 39Right-handed alpha
Helix 3
3
A
55 59Right-handed 310
Helix 4
4
A
67 74Right-handed 310
Helix 5
5
A
75 93Right-handed alpha
Helix 6
6
A
116 131Right-handed alpha
Helix 7
7
A
144 152Right-handed alpha
Helix 8
8
A
172 187Right-handed alpha
Helix 9
9
A
232 234Right-handed 310
Helix 10
10
A
235 241Right-handed alpha
Helix 11
11
A
265 267Right-handed 310
Helix 12
12
A
313 328Right-handed alpha
Helix 13
13
A
334 338Right-handed 310
Helix 14
14
A
353 357Right-handed 310
Helix 15
15
A
429 431Right-handed 310
Helix 16
16
A
432 453Right-handed alpha
Helix 17
17
A
475 489Right-handed alpha
Helix 18
18
A
493 505Right-handed alpha
Helix 19
19
A
507 517Right-handed alpha
Helix 20
20
A
525 539Right-handed alpha
Helix 21
21
A
543 550Right-handed alpha
Helix 22
22
A
553 558Right-handed alpha
Helix 23
23
A
561 578Right-handed alpha
Helix 24
24
A
580 599Right-handed alpha
Helix 25
25
A
600 605Right-handed alpha
Helix 26
26
B
3 14Right-handed alpha
Helix 27
27
B
27 40Right-handed alpha
Helix 28
28
B
55 59Right-handed 310
Helix 29
29
B
67 74Right-handed 310
Helix 30
30
B
75 93Right-handed alpha
Helix 31
31
B
116 131Right-handed alpha
Helix 32
32
B
144 152Right-handed alpha
Helix 33
33
B
172 187Right-handed alpha
Helix 34
34
B
232 234Right-handed 310
Helix 35
35
B
235 241Right-handed alpha
Helix 36
36
B
265 267Right-handed 310
Helix 37
37
B
313 328Right-handed alpha
Helix 38
38
B
334 338Right-handed 310
Helix 39
39
B
353 358Right-handed 310
Helix 40
40
B
429 431Right-handed 310
Helix 41
41
B
432 439Right-handed alpha
Helix 42
42
B
441 446Right-handed alpha
Helix 43
43
B
496 505Right-handed alpha
Helix 44
44
B
507 515Right-handed alpha
Helix 45
45
B
525 539Right-handed alpha
Helix 46
46
B
544 549Right-handed alpha
Helix 47
47
B
553 558Right-handed alpha
Helix 48
48
B
559 564Right-handed 310
Helix 49
49
B
565 578Right-handed alpha
Helix 50
50
B
582 599Right-handed alpha
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There are 12 sheets in PDB entry 2RGO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
44 48parallel
Strand 3
A
19 24parallel
Strand 4
A
220 230parallel
Strand 5
A
207 214anti-parallel
Strand 6
A
195 202anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
44 48parallel
Strand 3
A
19 24parallel
Strand 4
A
220 230parallel
Strand 5
A
423 427parallel
Strand 6
A
413 417anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
169 170anti-parallel
Strand 3
A
98 99anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
141 143anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
284 290anti-parallel
Strand 3
A
293 297anti-parallel
Strand 4
A
255 263anti-parallel
Strand 5
A
301 302anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
284 290anti-parallel
Strand 3
A
293 297anti-parallel
Strand 4
A
255 263anti-parallel
Strand 5
A
340 346anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
44 48parallel
Strand 3
B
19 24parallel
Strand 4
B
220 230parallel
Strand 5
B
209 214anti-parallel
Strand 6
B
195 201anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
44 48parallel
Strand 3
B
19 24parallel
Strand 4
B
220 230parallel
Strand 5
B
423 427parallel
Strand 6
B
413 417anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
169 170anti-parallel
Strand 3
B
98 99anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 107first strand
Strand 2
B
160 166anti-parallel
Strand 3
B
141 143anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 276first strand
Strand 2
B
284 290anti-parallel
Strand 3
B
293 297anti-parallel
Strand 4
B
255 263anti-parallel
Strand 5
B
301 302anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 276first strand
Strand 2
B
284 290anti-parallel
Strand 3
B
293 297anti-parallel
Strand 4
B
255 263anti-parallel
Strand 5
B
340 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il