Analysis of interatomic Contacts of Structural Units in PDB entry:
2RIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RIJ entry

There is 1 chain in PDB entry 2RIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LYS 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2RIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 17Right-handed alpha
Helix 2
2
A
55 69Right-handed alpha
Helix 3
3
A
85 96Right-handed alpha
Helix 4
4
A
97 100Right-handed 310
Helix 5
5
A
105 117Right-handed alpha
Helix 6
6
A
136 149Right-handed alpha
Helix 7
7
A
161 166Right-handed alpha
Helix 8
8
A
178 192Right-handed alpha
Helix 9
9
A
206 210Right-handed 310
Helix 10
10
A
221 225Right-handed 310
Helix 11
11
A
330 338Right-handed alpha
Helix 12
12
A
351 354Right-handed 310
Helix 13
13
A
375 380Right-handed alpha
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There are 6 sheets in PDB entry 2RIJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
26 34anti-parallel
Strand 3
A
51 52anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
26 34anti-parallel
Strand 3
A
123 128anti-parallel
Strand 4
A
79 83anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
169 172anti-parallel
Strand 3
A
200 202anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
236 237parallel
Strand 3
A
255 256parallel
Strand 4
A
271 272parallel
Strand 5
A
297 298parallel
Strand 6
A
313 314parallel
Strand 7
A
359 363parallel
Strand 8
A
370 374anti-parallel
Strand 9
A
325 328parallel
Strand 10
A
347 349anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
259 260parallel
Strand 3
A
277 278parallel
Strand 4
A
303 304parallel
Strand 5
A
319 320parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
265 266parallel
Strand 3
A
291 292parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il