Analysis of interatomic Contacts of Structural Units in PDB entry:
2RIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RIP entry

There is 1 chain in PDB entry 2RIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 38PRO 766
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2RIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 51Right-handed alpha
Helix 2
2
A
200 207Right-handed alpha
Helix 3
3
A
290 295Right-handed alpha
Helix 4
4
A
341 344Right-handed 310
Helix 5
5
A
421 425Right-handed 310
Helix 6
6
A
497 506Right-handed alpha
Helix 7
7
A
562 570Right-handed alpha
Helix 8
8
A
587 592Right-handed alpha
Helix 9
9
A
593 595Right-handed 310
Helix 10
10
A
600 616Right-handed alpha
Helix 11
11
A
630 641Right-handed alpha
Helix 12
12
A
658 662Right-handed 310
Helix 13
13
A
663 672Right-handed alpha
Helix 14
14
A
679 686Right-handed alpha
Helix 15
15
A
688 698Right-handed 310
Helix 16
16
A
712 725Right-handed alpha
Helix 17
17
A
744 764Right-handed alpha
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There are 12 sheets in PDB entry 2RIP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
67 72anti-parallel
Strand 3
A
75 80anti-parallel
Strand 4
A
86 90anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
113 122anti-parallel
Strand 3
A
128 136anti-parallel
Strand 4
A
141 142anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 157first strand
Strand 2
A
164 168anti-parallel
Strand 3
A
171 175anti-parallel
Strand 4
A
183 184anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
222 229anti-parallel
Strand 3
A
214 216anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
222 229anti-parallel
Strand 3
A
265 272anti-parallel
Strand 4
A
285 286anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 240first strand
Strand 2
A
250 255anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 307first strand
Strand 2
A
310 317anti-parallel
Strand 3
A
322 331anti-parallel
Strand 4
A
336 339anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 307first strand
Strand 2
A
310 317anti-parallel
Strand 3
A
322 331anti-parallel
Strand 4
A
345 348anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 364first strand
Strand 2
A
370 376anti-parallel
Strand 3
A
382 388anti-parallel
Strand 4
A
395 396anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 410first strand
Strand 2
A
414 419anti-parallel
Strand 3
A
430 435anti-parallel
Strand 4
A
438 444anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 461first strand
Strand 2
A
467 472anti-parallel
Strand 3
A
479 484anti-parallel
Strand 4
A
489 495anti-parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 519first strand
Strand 2
A
522 530anti-parallel
Strand 3
A
574 578anti-parallel
Strand 4
A
540 546parallel
Strand 5
A
619 629parallel
Strand 6
A
649 653parallel
Strand 7
A
699 705parallel
Strand 8
A
731 735parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il