Analysis of interatomic Contacts of Structural Units in PDB entry:
2RIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RIV entry

There are 2 chains in PDB entry 2RIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 17ARG 355
B
 HIS 362ALA 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2RIV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 41Right-handed alpha
Helix 2
2
A
49 63Right-handed alpha
Helix 3
3
A
65 76Right-handed alpha
Helix 4
4
A
84 101Right-handed alpha
Helix 5
5
A
123 134Right-handed alpha
Helix 6
6
A
145 161Right-handed alpha
Helix 7
7
A
195 199Right-handed 310
Helix 8
8
A
256 264Right-handed alpha
Helix 9
9
A
265 276Right-handed alpha
Helix 10
10
A
296 304Right-handed alpha
Helix 11
11
A
306 310Right-handed 310
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There are 3 sheets in PDB entry 2RIV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
B
382 389anti-parallel
Strand 3
B
371 377anti-parallel
Strand 4
A
245 252anti-parallel
Strand 5
A
234 240anti-parallel
Strand 6
A
211 229anti-parallel
Strand 7
A
200 208anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
B
382 389anti-parallel
Strand 3
B
371 377anti-parallel
Strand 4
A
245 252anti-parallel
Strand 5
A
234 240anti-parallel
Strand 6
A
211 229anti-parallel
Strand 7
A
277 286anti-parallel
Strand 8
B
364 366parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 141first strand
Strand 2
A
107 117parallel
Strand 3
A
178 189anti-parallel
Strand 4
A
341 354anti-parallel
Strand 5
A
324 337anti-parallel
Strand 6
A
288 295anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il