Analysis of interatomic Contacts of Structural Units in PDB entry:
2RJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RJB entry

There are 4 chains in PDB entry 2RJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 446
B
 ILE 5LEU 446
C
 ILE 5LEU 446
D
 ILE 5GLU 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 2RJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 26Right-handed alpha
Helix 2
2
A
27 46Right-handed alpha
Helix 3
3
A
47 57Right-handed alpha
Helix 4
4
A
61 65Right-handed 310
Helix 5
5
A
75 88Right-handed alpha
Helix 6
6
A
98 103Right-handed 310
Helix 7
7
A
115 122Right-handed alpha
Helix 8
8
A
133 136Right-handed 310
Helix 9
9
A
138 151Right-handed alpha
Helix 10
10
A
156 170Right-handed alpha
Helix 11
11
A
173 189Right-handed alpha
Helix 12
12
A
197 208Right-handed alpha
Helix 13
13
A
208 216Right-handed alpha
Helix 14
14
A
231 239Right-handed alpha
Helix 15
15
A
240 243Right-handed 310
Helix 16
16
A
299 311Right-handed alpha
Helix 17
17
A
322 330Right-handed alpha
Helix 18
18
A
331 333Right-handed 310
Helix 19
19
A
336 343Right-handed alpha
Helix 20
20
A
353 359Right-handed alpha
Helix 21
21
A
360 363Right-handed 310
Helix 22
22
A
368 375Right-handed alpha
Helix 23
23
A
414 423Right-handed alpha
Helix 24
24
A
428 445Right-handed alpha
Helix 25
25
B
6 26Right-handed alpha
Helix 26
26
B
27 46Right-handed alpha
Helix 27
27
B
47 57Right-handed alpha
Helix 28
28
B
61 65Right-handed 310
Helix 29
29
B
75 88Right-handed alpha
Helix 30
30
B
98 103Right-handed 310
Helix 31
31
B
115 122Right-handed alpha
Helix 32
32
B
133 136Right-handed 310
Helix 33
33
B
138 151Right-handed alpha
Helix 34
34
B
156 170Right-handed alpha
Helix 35
35
B
173 185Right-handed alpha
Helix 36
36
B
186 189Right-handed 310
Helix 37
37
B
197 208Right-handed alpha
Helix 38
38
B
208 216Right-handed alpha
Helix 39
39
B
231 237Right-handed alpha
Helix 40
40
B
239 243Right-handed 310
Helix 41
41
B
299 313Right-handed alpha
Helix 42
42
B
321 330Right-handed alpha
Helix 43
43
B
331 333Right-handed 310
Helix 44
44
B
336 343Right-handed alpha
Helix 45
45
B
368 375Right-handed alpha
Helix 46
46
B
413 423Right-handed alpha
Helix 47
47
B
428 443Right-handed alpha
Helix 48
48
C
6 26Right-handed alpha
Helix 49
49
C
26 44Right-handed alpha
Helix 50
50
C
62 65Right-handed 310
Helix 51
51
C
75 88Right-handed alpha
Helix 52
52
C
100 103Right-handed 310
Helix 53
53
C
115 120Right-handed alpha
Helix 54
54
C
133 136Right-handed 310
Helix 55
55
C
138 152Right-handed alpha
Helix 56
56
C
156 167Right-handed alpha
Helix 57
57
C
174 186Right-handed alpha
Helix 58
58
C
197 208Right-handed alpha
Helix 59
59
C
208 216Right-handed alpha
Helix 60
60
C
231 239Right-handed alpha
Helix 61
61
C
240 243Right-handed 310
Helix 62
62
C
299 311Right-handed alpha
Helix 63
63
C
322 330Right-handed alpha
Helix 64
64
C
336 343Right-handed alpha
Helix 65
65
C
414 423Right-handed alpha
Helix 66
66
C
428 444Right-handed alpha
Helix 67
67
D
6 13Right-handed alpha
Helix 68
68
D
13 24Right-handed alpha
Helix 69
69
D
26 45Right-handed alpha
Helix 70
70
D
60 65Right-handed 310
Helix 71
71
D
76 89Right-handed alpha
Helix 72
72
D
100 103Right-handed 310
Helix 73
73
D
141 151Right-handed alpha
Helix 74
74
D
156 170Right-handed alpha
Helix 75
75
D
175 184Right-handed alpha
Helix 76
76
D
185 189Right-handed 310
Helix 77
77
D
197 206Right-handed alpha
Helix 78
78
D
208 216Right-handed alpha
Helix 79
79
D
233 238Right-handed alpha
Helix 80
80
D
239 243Right-handed 310
Helix 81
81
D
299 314Right-handed alpha
Helix 82
82
D
322 330Right-handed alpha
Helix 83
83
D
331 333Right-handed 310
Helix 84
84
D
336 343Right-handed alpha
Helix 85
85
D
414 421Right-handed alpha
Helix 86
86
D
428 438Right-handed alpha
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There are 10 sheets in PDB entry 2RJB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
106 112anti-parallel
Strand 3
A
125 131anti-parallel
Strand 4
A
67 73parallel
Strand 5
A
224 227anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 276first strand
Strand 2
A
279 294anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 352first strand
Strand 2
A
378 382anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
106 112anti-parallel
Strand 3
B
125 131anti-parallel
Strand 4
B
67 73parallel
Strand 5
B
224 227anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 274first strand
Strand 2
B
283 294anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 352first strand
Strand 2
B
378 382anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 98first strand
Strand 2
C
106 112anti-parallel
Strand 3
C
125 131anti-parallel
Strand 4
C
67 73parallel
Strand 5
C
226 227anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 274first strand
Strand 2
C
283 294anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 98first strand
Strand 2
D
106 112anti-parallel
Strand 3
D
125 131anti-parallel
Strand 4
D
67 73parallel
Strand 5
D
224 227anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
262 273first strand
Strand 2
D
284 294anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il