Analysis of interatomic Contacts of Structural Units in PDB entry:
2RJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RJO entry

There is 1 chain in PDB entry 2RJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 38ARG 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2RJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 70Right-handed alpha
Helix 2
2
A
81 96Right-handed alpha
Helix 3
3
A
108 123Right-handed alpha
Helix 4
4
A
137 142Right-handed 310
Helix 5
5
A
152 168Right-handed alpha
Helix 6
6
A
183 199Right-handed alpha
Helix 7
7
A
214 230Right-handed alpha
Helix 8
8
A
240 254Right-handed alpha
Helix 9
9
A
268 277Right-handed alpha
Helix 10
10
A
287 304Right-handed alpha
Helix 11
11
A
308 312Right-handed 310
Helix 12
12
A
313 316Right-handed 310
Helix 13
13
A
330 338Right-handed alpha
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There are 3 sheets in PDB entry 2RJO. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
42 47parallel
Strand 3
A
100 104parallel
Strand 4
A
125 129parallel
Strand 5
A
145 150parallel
Strand 6
A
318 321parallel
Strand 7
A
352 355anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 210first strand
Strand 2
A
172 178parallel
Strand 3
A
233 238parallel
Strand 4
A
262 263parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
324 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il