Analysis of interatomic Contacts of Structural Units in PDB entry:
2RJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RJT entry

There are 4 chains in PDB entry 2RJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ALA 409
D
 LYS 2ALA 409
C
 LYS 2ALA 409
B
 LYS 2ALA 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 2RJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 31Right-handed alpha
Helix 2
2
A
58 62Right-handed 310
Helix 3
3
A
64 70Right-handed 310
Helix 4
4
A
72 90Right-handed alpha
Helix 5
5
A
92 96Right-handed 310
Helix 6
6
A
97 99Right-handed 310
Helix 7
7
A
111 126Right-handed alpha
Helix 8
8
A
127 130Right-handed 310
Helix 9
9
A
133 139Right-handed alpha
Helix 10
10
A
141 152Right-handed alpha
Helix 11
11
A
162 164Right-handed 310
Helix 12
12
A
165 180Right-handed alpha
Helix 13
13
A
196 206Right-handed alpha
Helix 14
14
A
243 249Right-handed alpha
Helix 15
15
A
276 291Right-handed alpha
Helix 16
16
A
293 297Right-handed 310
Helix 17
17
A
307 323Right-handed alpha
Helix 18
18
A
331 336Right-handed alpha
Helix 19
19
A
338 340Right-handed 310
Helix 20
20
A
341 357Right-handed alpha
Helix 21
21
D
20 30Right-handed alpha
Helix 22
22
D
58 62Right-handed 310
Helix 23
23
D
64 70Right-handed 310
Helix 24
24
D
72 90Right-handed alpha
Helix 25
25
D
92 96Right-handed 310
Helix 26
26
D
97 99Right-handed 310
Helix 27
27
D
111 126Right-handed alpha
Helix 28
28
D
127 130Right-handed 310
Helix 29
29
D
133 139Right-handed alpha
Helix 30
30
D
141 152Right-handed alpha
Helix 31
31
D
162 164Right-handed 310
Helix 32
32
D
165 180Right-handed alpha
Helix 33
33
D
196 206Right-handed alpha
Helix 34
34
D
243 249Right-handed alpha
Helix 35
35
D
276 291Right-handed alpha
Helix 36
36
D
293 297Right-handed 310
Helix 37
37
D
307 323Right-handed alpha
Helix 38
38
D
331 336Right-handed alpha
Helix 39
39
D
338 340Right-handed 310
Helix 40
40
D
341 356Right-handed alpha
Helix 41
41
C
20 31Right-handed alpha
Helix 42
42
C
58 62Right-handed 310
Helix 43
43
C
64 70Right-handed 310
Helix 44
44
C
72 89Right-handed alpha
Helix 45
45
C
92 96Right-handed 310
Helix 46
46
C
97 99Right-handed 310
Helix 47
47
C
111 126Right-handed alpha
Helix 48
48
C
127 130Right-handed 310
Helix 49
49
C
133 139Right-handed alpha
Helix 50
50
C
141 152Right-handed alpha
Helix 51
51
C
162 164Right-handed 310
Helix 52
52
C
165 180Right-handed alpha
Helix 53
53
C
196 206Right-handed alpha
Helix 54
54
C
243 249Right-handed alpha
Helix 55
55
C
276 291Right-handed alpha
Helix 56
56
C
293 297Right-handed 310
Helix 57
57
C
307 323Right-handed alpha
Helix 58
58
C
331 336Right-handed alpha
Helix 59
59
C
338 340Right-handed 310
Helix 60
60
C
341 357Right-handed alpha
Helix 61
61
B
20 30Right-handed alpha
Helix 62
62
B
58 62Right-handed 310
Helix 63
63
B
64 70Right-handed 310
Helix 64
64
B
72 90Right-handed alpha
Helix 65
65
B
92 96Right-handed 310
Helix 66
66
B
111 126Right-handed alpha
Helix 67
67
B
127 130Right-handed 310
Helix 68
68
B
133 139Right-handed alpha
Helix 69
69
B
141 152Right-handed alpha
Helix 70
70
B
162 164Right-handed 310
Helix 71
71
B
165 180Right-handed alpha
Helix 72
72
B
196 207Right-handed alpha
Helix 73
73
B
243 249Right-handed alpha
Helix 74
74
B
276 291Right-handed alpha
Helix 75
75
B
293 297Right-handed 310
Helix 76
76
B
307 323Right-handed alpha
Helix 77
77
B
331 336Right-handed alpha
Helix 78
78
B
338 340Right-handed 310
Helix 79
79
B
341 357Right-handed alpha
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There are 10 sheets in PDB entry 2RJT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 22 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
327 329parallel
Strand 3
A
300 301parallel
Strand 4
A
388 395parallel
Strand 5
A
399 407anti-parallel
Strand 6
A
255 264anti-parallel
Strand 7
A
6 14anti-parallel
Strand 8
A
234 242anti-parallel
Strand 9
A
185 192anti-parallel
Strand 10
A
101 106parallel
Strand 11
A
157 161parallel
Strand 12
B
157 161anti-parallel
Strand 13
B
101 106parallel
Strand 14
B
185 192parallel
Strand 15
B
234 242anti-parallel
Strand 16
B
6 14anti-parallel
Strand 17
B
255 264anti-parallel
Strand 18
B
399 407anti-parallel
Strand 19
B
388 395anti-parallel
Strand 20
B
299 301parallel
Strand 21
B
327 329parallel
Strand 22
B
375 376parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
50 52anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
382 383anti-parallel
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There are 22 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
375 376first strand
Strand 2
D
327 329parallel
Strand 3
D
300 301parallel
Strand 4
D
388 395parallel
Strand 5
D
399 407anti-parallel
Strand 6
D
255 264anti-parallel
Strand 7
D
6 14anti-parallel
Strand 8
D
234 242anti-parallel
Strand 9
D
185 192anti-parallel
Strand 10
D
101 106parallel
Strand 11
D
157 161parallel
Strand 12
C
157 161anti-parallel
Strand 13
C
101 106parallel
Strand 14
C
185 192parallel
Strand 15
C
234 242anti-parallel
Strand 16
C
6 14anti-parallel
Strand 17
C
255 264anti-parallel
Strand 18
C
399 407anti-parallel
Strand 19
C
388 395anti-parallel
Strand 20
C
299 301parallel
Strand 21
C
327 329parallel
Strand 22
C
375 376parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 37first strand
Strand 2
D
50 52anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
358 359first strand
Strand 2
D
382 383anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 37first strand
Strand 2
C
50 52anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
358 359first strand
Strand 2
C
382 383anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
50 52anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 359first strand
Strand 2
B
382 383anti-parallel
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