Analysis of interatomic Contacts of Structural Units in PDB entry:
2RKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RKQ entry

There is 1 chain in PDB entry 2RKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 11LEU 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2RKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 21Right-handed 310
Helix 2
2
A
50 68Right-handed alpha
Helix 3
3
A
99 103Right-handed 310
Helix 4
4
A
121 138Right-handed alpha
Helix 5
5
A
151 153Right-handed 310
Helix 6
6
A
160 168Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2RKQ.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
86 88parallel
Strand 3
A
78 80anti-parallel
Strand 4
A
106 111parallel
Strand 5
A
35 42parallel
Strand 6
A
141 149parallel
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