Analysis of interatomic Contacts of Structural Units in PDB entry:
2RKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RKZ entry

There are 12 chains in PDB entry 2RKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 63ILE 151
B
 GLU 63ILE 151
C
 ALA 62ILE 151
D
 ALA 62ILE 151
E
 GLU 63PRO 150
F
 GLU 63ILE 151
M
 GLU 529GLU 546
N
 GLU 529TYR 547
O
 GLU 529ASP 548
P
 GLU 529SER 549
Q
 GLU 529ASP 548
R
 GLU 529TYR 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2RKZ

There are 21 sheets in PDB entry 2RKZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
73 76anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 85first strand
Strand 2
A
88 96anti-parallel
Strand 3
A
101 105anti-parallel
Strand 4
M
542 545anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
115 118anti-parallel
Strand 3
D
63 68anti-parallel
Strand 4
D
73 76anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
133 140anti-parallel
Strand 3
A
145 150anti-parallel
Strand 4
M
531 533anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
74 76anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 85first strand
Strand 2
B
88 96anti-parallel
Strand 3
B
101 105anti-parallel
Strand 4
N
542 545anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
115 118anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 126first strand
Strand 2
B
133 140anti-parallel
Strand 3
B
145 150anti-parallel
Strand 4
N
531 533anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 68first strand
Strand 2
C
73 76anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
88 96anti-parallel
Strand 3
C
101 105anti-parallel
Strand 4
O
542 546anti-parallel
Strand 5
P
542 546anti-parallel
Strand 6
D
101 105anti-parallel
Strand 7
D
88 96anti-parallel
Strand 8
D
80 85anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 112first strand
Strand 2
C
115 118anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 126first strand
Strand 2
C
133 140anti-parallel
Strand 3
C
145 150anti-parallel
Strand 4
O
531 533anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
109 112first strand
Strand 2
D
115 118anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
122 125first strand
Strand 2
D
134 140anti-parallel
Strand 3
D
145 150anti-parallel
Strand 4
P
531 533anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
65 68first strand
Strand 2
E
73 76anti-parallel
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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
80 85first strand
Strand 2
E
88 96anti-parallel
Strand 3
E
101 105anti-parallel
Strand 4
Q
542 546anti-parallel
Strand 5
R
542 546anti-parallel
Strand 6
F
101 105anti-parallel
Strand 7
F
88 96anti-parallel
Strand 8
F
80 85anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
109 112first strand
Strand 2
E
115 118anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 124first strand
Strand 2
E
135 140anti-parallel
Strand 3
E
145 149anti-parallel
Strand 4
Q
531 533anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
65 67first strand
Strand 2
F
74 76anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
109 112first strand
Strand 2
F
115 118anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
122 126first strand
Strand 2
F
133 140anti-parallel
Strand 3
F
145 150anti-parallel
Strand 4
R
531 533anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il